RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 F11RQ9Y624 299 aaKnown RBP7.18□□□□□ -1.26
LDLR-211ENST00000560173 U3KQ87 197 aa7.18□□□□□ -1.26
LDLR-211ENST00000560173 A0A1B0GU03 582 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 MFSD2BA6NFX1 497 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 E5RGE8 158 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 CYB5BO43169 146 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 ST8SIA3O43173 380 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 CXCL2P19875 107 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 IL15RAQ13261 267 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 KLF5Q13887 457 aaPredicted RBP7.17□□□□□ -1.26
LDLR-211ENST00000560173 RPEL1Q2QD12 228 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 LRRC37A5PQ49AS3 106 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 Q5BKY6 102 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 SPINK9Q5DT21 86 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 ACSM6Q6P461 480 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 REC114Q7Z4M0 266 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 OR2C3Q8N628 320 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 SLC35G3Q8N808 338 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 ZNF114Q8NC26 417 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 EEF1AKMT3Q96AZ1 226 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 GPR146Q96CH1 333 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 PHYHIPLQ96FC7 376 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 CCDC140Q96MF4 163 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 AQP10Q96PS8 301 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 PLEKHA3Q9HB20 300 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 AURKAIP1Q9NWT8 199 aaPredicted RBP7.17□□□□□ -1.26
LDLR-211ENST00000560173 MBD2Q9UBB5 411 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 S4R3C0 116 aa7.17□□□□□ -1.26
LDLR-211ENST00000560173 SORL1Q92673 2214 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 TRBV7-1A0A0A6YYK4 115 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 PPP5D1E7EU14 171 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 INS-IGF2F8WCM5 200 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 BCL2L11O43521 198 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 DEDDO75618 318 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 LY86O95711 162 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 IGHV3-23P01764 117 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 INSL3P51460 131 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 SYNJ2BPP57105 145 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 S100A10P60903 97 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 NMSQ5H8A3 153 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 EIF5AL1Q6IS14 154 aaKnown RBP7.16□□□□□ -1.26
LDLR-211ENST00000560173 SLC25A24Q6NUK1 477 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 LYZL2Q7Z4W2 148 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 ZNF680Q8NEM1 530 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 OR1L6Q8NGR2 347 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 OR1P1Q8NH06 330 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 ZNF502Q8TBZ5 544 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 LRRC20Q8TCA0 184 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 VN1R17PQ8TDU5 208 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 OR10C1Q96KK4 312 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 CXorf58Q96LI9 332 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 ARPC5LQ9BPX5 153 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 ZC4H2Q9NQZ6 224 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 THYN1Q9P016 225 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 CACNG5Q9UF02 275 aa7.16□□□□□ -1.26
LDLR-211ENST00000560173 FAM90A26D6RGX4 464 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 K7EIM0 57 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 K7EPK0 472 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 WRBO00258 174 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 GGCTO75223 188 aaKnown RBP7.15□□□□□ -1.26
LDLR-211ENST00000560173 SAP30O75446 220 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 SCAF4O95104 1147 aaKnown RBP7.15□□□□□ -1.26
LDLR-211ENST00000560173 IFNA17P01571 189 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 S100A1P23297 94 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 ARL3P36405 182 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 NKX2-1P43699 371 aaPredicted RBP7.15□□□□□ -1.26
LDLR-211ENST00000560173 P2RY1P47900 373 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 SPCS3P61009 180 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 RAB32Q13637 225 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 CLEC19AQ6UXS0 136 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 IL34Q6ZMJ4 242 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 OR9G4Q8NGQ1 327 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 OR52E5Q8NH55 327 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 SCARB1Q8WTV0 552 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 RNF126Q9BV68 326 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 ELOVL1Q9BW60 279 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 SLC25A31Q9H0C2 315 aa7.15□□□□□ -1.26
LDLR-211ENST00000560173 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.15□□□□□ -1.26
LDLR-211ENST00000560173 ZMAT5Q9UDW3 170 aaKnown RBP7.15□□□□□ -1.26
LDLR-211ENST00000560173 TMA7Q9Y2S6 64 aaKnown RBP7.15□□□□□ -1.26
LDLR-211ENST00000560173 IGHV3-21A0A0B4J1V1 117 aa7.14□□□□□ -1.27
LDLR-211ENST00000560173 WI2-2373I1.2A0A1W2PRP0 233 aa7.14□□□□□ -1.27
LDLR-211ENST00000560173 F8W735 103 aaPredicted RBP7.14□□□□□ -1.27
LDLR-211ENST00000560173 K7EIL1 84 aa7.14□□□□□ -1.27
LDLR-211ENST00000560173 MED6O75586 246 aa7.14□□□□□ -1.27
LDLR-211ENST00000560173 TPT1P13693 172 aaKnown RBP7.14□□□□□ -1.27
LDLR-211ENST00000560173 GPR183P32249 361 aa7.14□□□□□ -1.27
LDLR-211ENST00000560173 HOXA1P49639 335 aaPredicted RBP7.14□□□□□ -1.27
LDLR-211ENST00000560173 VAMP2P63027 116 aa7.14□□□□□ -1.27
LDLR-211ENST00000560173 ERHP84090 104 aaKnown RBP7.14□□□□□ -1.27
LDLR-211ENST00000560173 PVRIGQ6DKI7 326 aa7.14□□□□□ -1.27
LDLR-211ENST00000560173 OR4D5Q8NGN0 318 aa7.14□□□□□ -1.27
LDLR-211ENST00000560173 STOML3Q8TAV4 291 aa7.14□□□□□ -1.27
LDLR-211ENST00000560173 BORCS7-ASMTA0A0B4J1R7 106 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 RNF222A6NCQ9 220 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 MPTX1A8MV57 137 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 I3L2K1 104 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 ATP6V1G1O75348 118 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 JTBO76095 146 aa7.13□□□□□ -1.27
LDLR-211ENST00000560173 OR2C1O95371 312 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms