RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 PUS1Q9Y606 427 aaKnown RBP eCLIP9.32□□□□□ -0.92
SNX1-209ENST00000559961 A0A0B4J293 547 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 INS-IGF2F8WCM5 200 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 GABARAPH6UMI1 98 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 NOL3O60936 208 aaKnown RBP9.31□□□□□ -0.92
SNX1-209ENST00000559961 GABARAPO95166 117 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 TMEM50AO95807 157 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 HTR2BP41595 481 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 SPCS3P61009 180 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 SP6Q3SY56 376 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 ETFRF1Q6IPR1 90 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 LHFPL1Q86WI0 220 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 OR13C8Q8NGS7 320 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 DNAH7Q8WXX0 4024 aa9.31□□□□□ -0.92
SNX1-209ENST00000559961 TRAV2A0A0B4J234 112 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 CEBPZOSA8MTT3 80 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 IGKV1-5P01602 117 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 RPL5P46777 297 aaKnown RBP9.3□□□□□ -0.92
SNX1-209ENST00000559961 IL18Q14116 193 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 SURF2Q15527 256 aaPredicted RBP9.3□□□□□ -0.92
SNX1-209ENST00000559961 IZUMO4Q1ZYL8 232 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 MARCH1Q8TCQ1 289 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 Q8WTZ3 238 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 ST8SIA2Q92186 375 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 ABHD1Q96SE0 405 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 PRRT1Q99946 306 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 MRPS26Q9BYN8 205 aaKnown RBP9.3□□□□□ -0.92
SNX1-209ENST00000559961 MS4A6AQ9H2W1 248 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 PFDN2Q9UHV9 154 aa9.3□□□□□ -0.92
SNX1-209ENST00000559961 PIGBOS1A0A0B4J2F0 54 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 IGHV3-66A0A0C4DH42 116 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 CLN5O75503 358 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 CA1P00915 261 aaPredicted RBP9.29□□□□□ -0.92
SNX1-209ENST00000559961 CD74P04233 296 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 AKAIN1P0CW23 69 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 UCP1P25874 307 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 AP2S1P53680 142 aaPredicted RBP9.29□□□□□ -0.92
SNX1-209ENST00000559961 TMEM187Q14656 261 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 CTF1Q16619 201 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 TMEM41BQ5BJD5 291 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 STXBP6Q8NFX7 210 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 OR11H2Q8NH07 326 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 OR4X1Q8NH49 305 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 OR52E5Q8NH55 327 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 RBPMSQ93062 196 aaKnown RBP9.29□□□□□ -0.92
SNX1-209ENST00000559961 DIRAS2Q96HU8 199 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 TMEM222Q9H0R3 208 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 VSIRQ9H7M9 311 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 SCP2D1Q9UJQ7 156 aa9.29□□□□□ -0.92
SNX1-209ENST00000559961 HELTA6NFD8 242 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 OR5AC1P0C628 307 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 RNASE2P10153 161 aaKnown RBP9.28□□□□□ -0.92
SNX1-209ENST00000559961 SLC25A4P12235 298 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 ANXA3P12429 323 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 DEFB131AP59861 70 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 FAM90A2PQ658T7 463 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 OR1S2Q8NGQ3 325 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 C11orf45Q8TAV5 145 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 LINC00476Q8WZB0 136 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 NAA50Q9GZZ1 169 aaKnown RBP9.28□□□□□ -0.92
SNX1-209ENST00000559961 NAA60Q9H7X0 242 aa9.28□□□□□ -0.92
SNX1-209ENST00000559961 CDS2O95674 445 aa9.27□□□□□ -0.93
SNX1-209ENST00000559961 RBMS2Q15434 407 aaKnown RBP9.27□□□□□ -0.93
SNX1-209ENST00000559961 TMEM268Q5VZI3 342 aa9.27□□□□□ -0.93
SNX1-209ENST00000559961 CLVS1Q8IUQ0 354 aaPredicted RBP9.27□□□□□ -0.93
SNX1-209ENST00000559961 OR4D10Q8NGI6 311 aa9.27□□□□□ -0.93
SNX1-209ENST00000559961 RNASEH2CQ8TDP1 164 aaKnown RBP9.27□□□□□ -0.93
SNX1-209ENST00000559961 PHLDA1Q8WV24 401 aaPredicted RBP9.27□□□□□ -0.93
SNX1-209ENST00000559961 FBXL17Q9UF56 701 aa9.27□□□□□ -0.93
SNX1-209ENST00000559961 RSL24D1Q9UHA3 163 aaKnown RBP9.27□□□□□ -0.93
SNX1-209ENST00000559961 RYR2Q92736 4967 aa9.27□□□□□ -0.93
SNX1-209ENST00000559961 DYNC2H1Q8NCM8 4307 aaKnown RBP9.26□□□□□ -0.93
SNX1-209ENST00000559961 GSTZ1O43708 216 aaPredicted RBP9.26□□□□□ -0.93
SNX1-209ENST00000559961 IFNA10P01566 189 aa9.26□□□□□ -0.93
SNX1-209ENST00000559961 P0C879 139 aa9.26□□□□□ -0.93
SNX1-209ENST00000559961 P2RY1P47900 373 aa9.26□□□□□ -0.93
SNX1-209ENST00000559961 ZNF124Q15973 351 aa9.26□□□□□ -0.93
SNX1-209ENST00000559961 LEMD1Q68G75 181 aa9.26□□□□□ -0.93
SNX1-209ENST00000559961 MORN3Q6PF18 240 aaPredicted RBP9.26□□□□□ -0.93
SNX1-209ENST00000559961 RAB2BQ8WUD1 216 aa9.26□□□□□ -0.93
SNX1-209ENST00000559961 SMIM4Q8WVI0 70 aa9.26□□□□□ -0.93
SNX1-209ENST00000559961 MCUBQ9NWR8 336 aa9.26□□□□□ -0.93
SNX1-209ENST00000559961 CACNG5Q9UF02 275 aa9.26□□□□□ -0.93
SNX1-209ENST00000559961 A0A1B0GU03 582 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 CTDSP2O14595 271 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 CTDSPLO15194 276 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 APOHP02749 345 aaPredicted RBP9.25□□□□□ -0.93
SNX1-209ENST00000559961 HNRNPCP07910 306 aaKnown RBP eCLIP9.25□□□□□ -0.93
SNX1-209ENST00000559961 SULT1A3P0DMM9 295 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 SULT1A4P0DMN0 295 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 SPP1P10451 314 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 CRYBB3P26998 211 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 OR10J1P30954 320 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 FAUP35544 74 aaKnown RBP9.25□□□□□ -0.93
SNX1-209ENST00000559961 NUP62P37198 522 aaPredicted RBP9.25□□□□□ -0.93
SNX1-209ENST00000559961 RND2P52198 227 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 NUTF2P61970 127 aaKnown RBP9.25□□□□□ -0.93
SNX1-209ENST00000559961 SNRPD3P62318 126 aaKnown RBP9.25□□□□□ -0.93
SNX1-209ENST00000559961 SRPXP78539 464 aa9.25□□□□□ -0.93
SNX1-209ENST00000559961 DHRS2Q13268 280 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms