RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 OR10J1P30954 320 aa13.46□□□□□ -0.26
LDLR-206ENST00000557958 EAF1Q96JC9 268 aaPredicted RBP13.46□□□□□ -0.26
LDLR-206ENST00000557958 TMEM250H0YL14 139 aa13.45□□□□□ -0.26
LDLR-206ENST00000557958 STAG3L2P0CL84 134 aa13.45□□□□□ -0.26
LDLR-206ENST00000557958 STAG3L3P0CL85 134 aa13.45□□□□□ -0.26
LDLR-206ENST00000557958 AKIRIN2Q53H80 203 aa13.45□□□□□ -0.26
LDLR-206ENST00000557958 PVRIGQ6DKI7 326 aa13.45□□□□□ -0.26
LDLR-206ENST00000557958 MAPK1IP1LQ8NDC0 245 aa13.45□□□□□ -0.26
LDLR-206ENST00000557958 TXNDC17Q9BRA2 123 aa13.45□□□□□ -0.26
LDLR-206ENST00000557958 TCEAL7Q9BRU2 100 aa13.45□□□□□ -0.26
LDLR-206ENST00000557958 H3BQ15 152 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 REG1AP05451 166 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 RAB5AP20339 215 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 SNRPEP62304 92 aaKnown RBP13.44□□□□□ -0.26
LDLR-206ENST00000557958 Q5PR19 223 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 TBX15Q96SF7 602 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 RNF2Q99496 336 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 TMPRSS5Q9H3S3 457 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 ASH1LQ9NR48 2969 aaKnown RBP13.44□□□□□ -0.26
LDLR-206ENST00000557958 S100A6P06703 90 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 FBP1P09467 338 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 BRS3P32247 399 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 SELENOTP62341 195 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 PNRC1Q12796 327 aaPredicted RBP13.44□□□□□ -0.26
LDLR-206ENST00000557958 OR1L6Q8NGR2 347 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 ABHD5Q8WTS1 349 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 TVP23CQ96ET8 276 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 MISP3Q96FF7 219 aa13.44□□□□□ -0.26
LDLR-206ENST00000557958 F11RQ9Y624 299 aaKnown RBP13.44□□□□□ -0.26
LDLR-206ENST00000557958 IGKV1OR2-108A0A075B7D4 117 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 TEX22C9J3V5 150 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 LINC00869P0C866 280 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 FAM106CPP0CH98 169 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 DEFA4P12838 97 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 AREGP15514 252 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 SLC25A16P16260 332 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 AKR1C3P42330 323 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 C5orf64Q2M2E5 130 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 SPNS3Q6ZMD2 512 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 CYP2G1PQ6ZSU1 146 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 C1QL4Q86Z23 238 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 OR2T6Q8NHC8 308 aa13.43□□□□□ -0.26
LDLR-206ENST00000557958 CENPEQ02224 2701 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 RNF223E7ERA6 249 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 ARL14EPLP0DKL9 152 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 TAS2R45P59539 299 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 EBI3Q14213 229 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 FAM90A2PQ658T7 463 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 FNDC4Q9H6D8 234 aaPredicted RBP13.42□□□□□ -0.26
LDLR-206ENST00000557958 C1RLQ9NZP8 487 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 B4DEV8 164 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 PDE6DO43924 150 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 PAGE4O60829 102 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 TMEM11P17152 192 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 CD81P60033 236 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 MLANAQ16655 118 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 FAM78BQ5VT40 261 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 LRRC75A-AS1Q8N1F1 130 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 THAP8Q8NA92 274 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 GATAD1Q8WUU5 269 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 NPIPB3Q92617 1050 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 Q96MF0 132 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 YPEL4Q96NS1 127 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 PFDN5Q99471 154 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 C20orf24Q9BUV8 137 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 FUT9Q9Y231 359 aa13.42□□□□□ -0.26
LDLR-206ENST00000557958 GCN1Q92616 2671 aaKnown RBP13.42□□□□□ -0.26
LDLR-206ENST00000557958 VPS13CQ709C8 3753 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 TCRBV4S1A1TA0A5B7 111 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 C11orf94C9JXX5 98 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 FCN1O00602 326 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 S100A9P06702 114 aaKnown RBP13.41□□□□□ -0.26
LDLR-206ENST00000557958 RND2P52198 227 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 BPIFB3P59826 476 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 FXYD3Q14802 87 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 OR1L4Q8NGR5 311 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 OR4F5Q8NH21 305 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 OR4F4Q96R69 305 aa13.41□□□□□ -0.26
LDLR-206ENST00000557958 MRPL32Q9BYC8 188 aaKnown RBP13.41□□□□□ -0.26
LDLR-206ENST00000557958 SEPSECSQ9HD40 501 aaKnown RBP13.41□□□□□ -0.26
LDLR-206ENST00000557958 TECRQ9NZ01 308 aaKnown RBP13.41□□□□□ -0.26
LDLR-206ENST00000557958 NCBP2LA6PVI3 153 aaKnown RBP13.4□□□□□ -0.26
LDLR-206ENST00000557958 CLN5O75503 358 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 CRYGCP07315 174 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 SAA4P35542 130 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 ISOC2Q96AB3 205 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 POLQO75417 2590 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 ZNF727A8MUV8 499 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 F6UZH7 168 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 NPFFO15130 113 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 OR5G3P0C626 314 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 CD24P25063 80 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 GCHFRP30047 84 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 PAX8Q06710 450 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 ZNF562Q6V9R5 426 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 PQLC2Q6ZP29 291 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 DYNAPQ8N1N2 210 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 Q8N6K4 173 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 TMEM116Q8NCL8 245 aa13.4□□□□□ -0.26
LDLR-206ENST00000557958 SMIM7Q9BQ49 75 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms