RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 RNASEH2CQ8TDP1 164 aaKnown RBP10.35□□□□□ -0.75
SHMT2-228ENST00000557302 CIB3Q96Q77 187 aaPredicted RBP10.35□□□□□ -0.75
SHMT2-228ENST00000557302 CHRDL1Q9BU40 450 aa10.35□□□□□ -0.75
SHMT2-228ENST00000557302 PALMDQ9NP74 551 aa10.35□□□□□ -0.75
SHMT2-228ENST00000557302 SIGLEC8Q9NYZ4 499 aa10.35□□□□□ -0.75
SHMT2-228ENST00000557302 MPTX1A8MV57 137 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 A8MWP6 167 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 SYNGR2O43760 224 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 IGLV1-51P01701 117 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 IL5P05113 134 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 CTSGP08311 255 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 IAPPP10997 89 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 ADMP35318 185 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 ATP5IP56385 69 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-228ENST00000557302 RELQ04864 619 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-228ENST00000557302 IAH1Q2TAA2 248 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-228ENST00000557302 HAPLN4Q86UW8 402 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 C12orf45Q8N5I9 185 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-228ENST00000557302 UXS1Q8NBZ7 420 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 TMEM170AQ8WVE7 144 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 ZNF436Q9C0F3 470 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-228ENST00000557302 MAGT1Q9H0U3 335 aa10.34□□□□□ -0.75
SHMT2-228ENST00000557302 FNDC4Q9H6D8 234 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-228ENST00000557302 ZNF256Q9Y2P7 627 aaPredicted RBP10.34□□□□□ -0.75
SHMT2-228ENST00000557302 C2orf70A6NJV1 201 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 WRBO00258 174 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 NDUFA4O00483 81 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 LY86O95711 162 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 FOLR2P14207 255 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 NKX2-1P43699 371 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-228ENST00000557302 ETFRF1Q6IPR1 90 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 UNQ9165/PRO28630Q6UXU0 137 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 DYNLRB2Q8TF09 96 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 TMEM190Q8WZ59 177 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 OR10C1Q96KK4 312 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 PRR25Q96S07 402 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 GPN1Q9HCN4 374 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-228ENST00000557302 UFC1Q9Y3C8 167 aa10.33□□□□□ -0.76
SHMT2-228ENST00000557302 WI2-2373I1.2A0A1W2PRP0 233 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 TMEM213A2RRL7 107 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 FAM25EA8MYX2 175 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 INMT-MINDY4F8WBC2 141 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 CCSO14618 274 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 PRAF2O60831 178 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 CLN5O75503 358 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 SCGB2A1O75556 95 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 IFNA4P05014 189 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 SLC25A4P12235 298 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 SPNP16150 400 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 ELLP55199 621 aaPredicted RBP10.32□□□□□ -0.76
SHMT2-228ENST00000557302 RPP30P78346 268 aaKnown RBP10.32□□□□□ -0.76
SHMT2-228ENST00000557302 ID3Q02535 119 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 MLANAQ16655 118 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 TM4SF20Q53R12 229 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 ADAMTSL5Q6ZMM2 481 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 ZBTB8BQ8NAP8 495 aaPredicted RBP10.32□□□□□ -0.76
SHMT2-228ENST00000557302 OR4D5Q8NGN0 318 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 OR4X1Q8NH49 305 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 MRAPQ8TCY5 172 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 MRPL36Q9P0J6 103 aaKnown RBP10.32□□□□□ -0.76
SHMT2-228ENST00000557302 GSKIPQ9P0R6 139 aa10.32□□□□□ -0.76
SHMT2-228ENST00000557302 PAIP2BQ9ULR5 123 aaKnown RBP10.32□□□□□ -0.76
SHMT2-228ENST00000557302 SORL1Q92673 2214 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 C15orf62A8K5M9 175 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 K7EIL1 84 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 YIF1AO95070 293 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 TMEM50AO95807 157 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 SCGB1D2O95969 90 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 CBLN1P23435 193 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 RND2P52198 227 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 POLR2GP62487 172 aaKnown RBP eCLIP10.31□□□□□ -0.76
SHMT2-228ENST00000557302 RAB11AP62491 216 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 CD69Q07108 199 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 PRSS54Q6PEW0 395 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 SLC16A13Q7RTY0 426 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 CACNG8Q8WXS5 425 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 MARC2Q969Z3 335 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 MARVELD1Q9BSK0 173 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 C20orf24Q9BUV8 137 aa10.31□□□□□ -0.76
SHMT2-228ENST00000557302 DAZ1Q9NQZ3 744 aaKnown RBP10.31□□□□□ -0.76
SHMT2-228ENST00000557302 TECRQ9NZ01 308 aaKnown RBP10.31□□□□□ -0.76
SHMT2-228ENST00000557302 TRAV30A0A087WSZ9 112 aa10.3□□□□□ -0.76
SHMT2-228ENST00000557302 C5orf51A6NDU8 294 aa10.3□□□□□ -0.76
SHMT2-228ENST00000557302 SSSCA1O60232 199 aa10.3□□□□□ -0.76
SHMT2-228ENST00000557302 GP9P14770 177 aa10.3□□□□□ -0.76
SHMT2-228ENST00000557302 EDN2P20800 178 aa10.3□□□□□ -0.76
SHMT2-228ENST00000557302 DCTN2Q13561 401 aaKnown RBP10.3□□□□□ -0.76
SHMT2-228ENST00000557302 LCN12Q6JVE5 192 aa10.3□□□□□ -0.76
SHMT2-228ENST00000557302 TMEM116Q8NCL8 245 aa10.3□□□□□ -0.76
SHMT2-228ENST00000557302 OR2K2Q8NGT1 345 aa10.3□□□□□ -0.76
SHMT2-228ENST00000557302 MRPL27Q9P0M9 148 aaKnown RBP10.3□□□□□ -0.76
SHMT2-228ENST00000557302 IGHV3OR16-8A0A075B7F1 116 aa10.29□□□□□ -0.76
SHMT2-228ENST00000557302 SNRPGP15A8MWD9 76 aa10.29□□□□□ -0.76
SHMT2-228ENST00000557302 K7EMT4 169 aa10.29□□□□□ -0.76
SHMT2-228ENST00000557302 C8orf88P0DMB2 117 aa10.29□□□□□ -0.76
SHMT2-228ENST00000557302 GPX4P36969 197 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-228ENST00000557302 DEFB114Q30KQ6 69 aa10.29□□□□□ -0.76
SHMT2-228ENST00000557302 CD300EQ496F6 205 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-228ENST00000557302 SPANXN5Q5MJ07 72 aa10.29□□□□□ -0.76
SHMT2-228ENST00000557302 ZNF600Q6ZNG1 722 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms