RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 SCARB1Q8WTV0 552 aa7.35□□□□□ -1.23
SCFD1-220ENST00000556486 LSM10Q969L4 123 aaKnown RBP7.35□□□□□ -1.23
SCFD1-220ENST00000556486 MOB3AQ96BX8 217 aa7.35□□□□□ -1.23
SCFD1-220ENST00000556486 GALNT14Q96FL9 552 aa7.35□□□□□ -1.23
SCFD1-220ENST00000556486 ZNF414Q96IQ9 312 aa7.35□□□□□ -1.23
SCFD1-220ENST00000556486 MAP6D1Q9H9H5 199 aa7.35□□□□□ -1.23
SCFD1-220ENST00000556486 DIABLOQ9NR28 239 aa7.35□□□□□ -1.23
SCFD1-220ENST00000556486 C21orf62Q9NYP8 219 aa7.35□□□□□ -1.23
SCFD1-220ENST00000556486 IGHV3-35A0A0C4DH35 117 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 OR2T8A6NH00 312 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 DEFB4AO15263 64 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 CTSGP08311 255 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 FXYD4P59646 89 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 ERVK-16P61578 105 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 BLOC1S1P78537 153 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 LCE1DQ5T752 114 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 AADACL3Q5VUY0 350 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 OR10C1Q96KK4 312 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 CHRDL1Q9BU40 450 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 TMEM14BQ9NUH8 114 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 FKBP11Q9NYL4 201 aa7.34□□□□□ -1.23
SCFD1-220ENST00000556486 TRAV34A0A0B4J273 112 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 PGLYRP1O75594 196 aaPredicted RBP7.33□□□□□ -1.24
SCFD1-220ENST00000556486 CMC4P56277 68 aaPredicted RBP7.33□□□□□ -1.24
SCFD1-220ENST00000556486 HERV-K104P61576 105 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 MXD1Q05195 221 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 IDNKQ5T6J7 187 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 SLC25A24Q6NUK1 477 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 TMEM17Q86X19 198 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 ZNF575Q86XF7 245 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 CROCCP3Q8IVE0 287 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 CMTM1Q8IZ96 169 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 ZNF114Q8NC26 417 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 OR1P1Q8NH06 330 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 FCAMRQ8WWV6 532 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 DGCR14Q96DF8 476 aaKnown RBP7.33□□□□□ -1.24
SCFD1-220ENST00000556486 TMEM56Q96MV1 263 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 TSC22D3Q99576 134 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 SMPXQ9UHP9 88 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 PRNDQ9UKY0 176 aa7.33□□□□□ -1.24
SCFD1-220ENST00000556486 C15orf61A6NNL5 157 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 IGLL5B9A064 214 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 M0R2N4 97 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 RLN1P04808 185 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 CD5P06127 495 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 TAS2R46P59540 309 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 RELQ04864 619 aaPredicted RBP7.32□□□□□ -1.24
SCFD1-220ENST00000556486 RBMS2Q15434 407 aaKnown RBP7.32□□□□□ -1.24
SCFD1-220ENST00000556486 LCE4AQ5TA78 99 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 TXN2Q99757 166 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 C6orf62Q9GZU0 229 aaPredicted RBP7.32□□□□□ -1.24
SCFD1-220ENST00000556486 C11orf68Q9H3H3 251 aaKnown RBP7.32□□□□□ -1.24
SCFD1-220ENST00000556486 RNF167Q9H6Y7 350 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 EHFQ9NZC4 300 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 OR51B2Q9Y5P1 312 aa7.32□□□□□ -1.24
SCFD1-220ENST00000556486 HSPG2P98160 4391 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 HERC1Q15751 4861 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 IGHV7-4-1A0A0J9YVY3 117 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 I3L2K1 104 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 GPR31O00270 319 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 CHEK1O14757 476 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 SNAPC5O75971 98 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 KRASP01116 189 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 CTSDP07339 412 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-220ENST00000556486 RPA2P15927 270 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 RFX2P48378 723 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 ZNF674Q2M3X9 581 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 C11orf45Q8TAV5 145 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 S100A16Q96FQ6 103 aaKnown RBP7.31□□□□□ -1.24
SCFD1-220ENST00000556486 RNF2Q99496 336 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 ZNF2Q9BSG1 426 aaPredicted RBP7.31□□□□□ -1.24
SCFD1-220ENST00000556486 C20orf24Q9BUV8 137 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 RHPN1-AS1Q9BWJ2 59 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 NXF2Q9GZY0 626 aaKnown RBP7.31□□□□□ -1.24
SCFD1-220ENST00000556486 CSTL1Q9H114 145 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 Q9H521 79 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 IFT46Q9NQC8 304 aa7.31□□□□□ -1.24
SCFD1-220ENST00000556486 TRAV2A0A0B4J234 112 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 LOC100506127A0A0U1RQW1 187 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 NUPL2O15504 423 aaKnown RBP7.3□□□□□ -1.24
SCFD1-220ENST00000556486 IFNA4P05014 189 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 ANXA7P20073 488 aaKnown RBP7.3□□□□□ -1.24
SCFD1-220ENST00000556486 G6PCP35575 357 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 LPAR6P43657 344 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 TCTAP57738 103 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 UBE2NLQ5JXB2 153 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 LINC00336Q6ZUF6 198 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 NOXA1Q86UR1 476 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 OR6F1Q8NGZ6 308 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 SEC22AQ96IW7 307 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 MFFQ9GZY8 342 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 FXYD6Q9H0Q3 95 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 APLNQ9ULZ1 77 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 NSG2Q9Y328 171 aa7.3□□□□□ -1.24
SCFD1-220ENST00000556486 MEIS3P1A6NDR6 274 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 MPTX1A8MV57 137 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 INS-IGF2F8WCM5 200 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 RTL8CO15255 209 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 DFFBO76075 338 aa7.29□□□□□ -1.24
SCFD1-220ENST00000556486 FCER2P06734 321 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms