RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ARL3P36405 182 aa10.84□□□□□ -0.67
VIPAS39-208ENST00000556412 MFAP4P55083 255 aa10.84□□□□□ -0.67
VIPAS39-208ENST00000556412 RUNX1Q01196 453 aa10.84□□□□□ -0.67
VIPAS39-208ENST00000556412 ZNF616Q08AN1 781 aa10.84□□□□□ -0.67
VIPAS39-208ENST00000556412 PVRIGQ6DKI7 326 aa10.84□□□□□ -0.67
VIPAS39-208ENST00000556412 FAM24AA6NFZ4 105 aa10.83□□□□□ -0.68
VIPAS39-208ENST00000556412 LINC01619G3V211 115 aa10.83□□□□□ -0.68
VIPAS39-208ENST00000556412 MPC2O95563 127 aa10.83□□□□□ -0.68
VIPAS39-208ENST00000556412 GIPP09681 153 aaPredicted RBP10.83□□□□□ -0.68
VIPAS39-208ENST00000556412 ETFRF1Q6IPR1 90 aa10.83□□□□□ -0.68
VIPAS39-208ENST00000556412 SLC16A13Q7RTY0 426 aa10.83□□□□□ -0.68
VIPAS39-208ENST00000556412 ACY3Q96HD9 319 aa10.83□□□□□ -0.68
VIPAS39-208ENST00000556412 E5RGE8 158 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 H0YIZ8 118 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 GNG7O60262 68 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 CCNKO75909 580 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 MYCNOSP40205 109 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 SLURP1P55000 103 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 CD69Q07108 199 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 RPEL1Q2QD12 228 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 MRPL36Q9P0J6 103 aaKnown RBP10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 MBD2Q9UBB5 411 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 STAB1Q9NY15 2570 aa10.82□□□□□ -0.68
VIPAS39-208ENST00000556412 IGHV3-35A0A0C4DH35 117 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 BMPR1BO00238 502 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 CST7O76096 145 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 SLC25A4P12235 298 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 HOXD3P31249 432 aaPredicted RBP10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 NPBWR1P48145 328 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 RND2P52198 227 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 RAP2BP61225 183 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 FAM209BQ5JX69 171 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 PRSS54Q6PEW0 395 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 TMEM14EPQ6UXP3 125 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 TMEM217Q8N7C4 229 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 THAP6Q8TBB0 222 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 CHAC2Q8WUX2 184 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 DCUN1D4Q92564 292 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 SLC35E1Q96K37 410 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 C11orf1Q9H5F2 150 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 LYRM2Q9NU23 88 aaPredicted RBP10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 TET2Q6N021 2002 aaPredicted RBP10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 SMCO3A2RU48 225 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 TGOLN2O43493 480 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 GGCTO75223 188 aaKnown RBP10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 OR2C1O95371 312 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 ACOT7LQ6ZUV0 252 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 OR10P1Q8NGE3 313 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 OR2T35Q8NGX2 323 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 NPIPB3Q92617 1050 aa10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 BSCL2Q96G97 398 aaPredicted RBP10.81□□□□□ -0.68
VIPAS39-208ENST00000556412 A0A1B0GVG6 124 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 IGSF23A1L1A6 192 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 F8W735 103 aaPredicted RBP10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 NUPL2O15504 423 aaKnown RBP10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 ZP3P21754 424 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 FGL1Q08830 312 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 STX12Q86Y82 276 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 TMEM252Q8N6L7 170 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 ASB13Q8WXK3 278 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 TXN2Q99757 166 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 CHRDL1Q9BU40 450 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 RNF126Q9BV68 326 aa10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 GAR1Q9NY12 217 aaKnown RBP10.8□□□□□ -0.68
VIPAS39-208ENST00000556412 TRAV14DV4A0A0A6YYC5 116 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 GPX4P36969 197 aaPredicted RBP10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 P2RY1P47900 373 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 AKR1C1Q04828 323 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 FHL3Q13643 280 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 GAMTQ14353 236 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 Q5BKY6 102 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 OR4X1Q8NH49 305 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 PRSS46E5RG02 174 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 SMLR1H3BR10 107 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 CLN5O75503 358 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 SCGB2A1O75556 95 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 SULT1A1P50225 295 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 SYNJ2BPP57105 145 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 ARL16Q0P5N6 197 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 HAPLN4Q86UW8 402 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 LILRB2Q8N423 598 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 CACNG8Q8WXS5 425 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 DLX4Q92988 240 aaPredicted RBP10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 SLC25A31Q9H0C2 315 aa10.79□□□□□ -0.68
VIPAS39-208ENST00000556412 FXYD6-FXYD2A0A087WZ82 144 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 ZNF320A2RRD8 509 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 PMS2P5A8MQ11 134 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 YIF1AO95070 293 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 CTSGP08311 255 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 CD33P20138 364 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 OR10J1P30954 320 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 FCGR2BP31994 310 aaPredicted RBP10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 ADMP35318 185 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 EWSR1Q01844 656 aaKnown RBP eCLIP10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 SLC38A11Q08AI6 406 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 SPSB3Q6PJ21 355 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 LINC00482Q8N8I6 264 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 TMEM116Q8NCL8 245 aa10.78□□□□□ -0.68
VIPAS39-208ENST00000556412 ZFP92A6NM28 416 aa10.77□□□□□ -0.68
VIPAS39-208ENST00000556412 TIGITQ495A1 244 aa10.77□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms