RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 RBPMSQ93062 196 aaKnown RBP10.95□□□□□ -0.66
SHMT2-217ENST00000555116 HINT2Q9BX68 163 aa10.95□□□□□ -0.66
SHMT2-217ENST00000555116 DMRT1Q9Y5R6 373 aa10.95□□□□□ -0.66
SHMT2-217ENST00000555116 IGLV11-55A0A075B6I3 123 aa10.94□□□□□ -0.66
SHMT2-217ENST00000555116 OR13C7P0DN81 318 aa10.94□□□□□ -0.66
SHMT2-217ENST00000555116 SLURP1P55000 103 aa10.94□□□□□ -0.66
SHMT2-217ENST00000555116 ATP5G2Q06055 141 aa10.94□□□□□ -0.66
SHMT2-217ENST00000555116 SMCO1Q147U7 214 aa10.94□□□□□ -0.66
SHMT2-217ENST00000555116 LSM10Q969L4 123 aaKnown RBP10.94□□□□□ -0.66
SHMT2-217ENST00000555116 FBXL7Q9UJT9 491 aa10.94□□□□□ -0.66
SHMT2-217ENST00000555116 LSM5Q9Y4Y9 91 aaKnown RBP10.94□□□□□ -0.66
SHMT2-217ENST00000555116 MFSD2BA6NFX1 497 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 K7EPK0 472 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 NDUFB8O95169 186 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 SCGB1D2O95969 90 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 TRBV12-3P01733 135 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 TPT1P13693 172 aaKnown RBP10.93□□□□□ -0.66
SHMT2-217ENST00000555116 HIST1H1BP16401 226 aaKnown RBP10.93□□□□□ -0.66
SHMT2-217ENST00000555116 HSPE1P61604 102 aaKnown RBP10.93□□□□□ -0.66
SHMT2-217ENST00000555116 ZNF429Q86V71 674 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 BAP18Q8IXM2 172 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 MCRIP2Q9BUT9 160 aaKnown RBP10.93□□□□□ -0.66
SHMT2-217ENST00000555116 MEGF8Q7Z7M0 2845 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 RPL12P30050 165 aaKnown RBP10.93□□□□□ -0.66
SHMT2-217ENST00000555116 DEFA6Q01524 100 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 C15orf32Q32M92 178 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 Q6ZRM9 215 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 DLX4Q92988 240 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-217ENST00000555116 IL22RA2Q969J5 263 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 PEF1Q9UBV8 284 aaKnown RBP10.93□□□□□ -0.66
SHMT2-217ENST00000555116 PFDN2Q9UHV9 154 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 PRELID1Q9Y255 219 aa10.93□□□□□ -0.66
SHMT2-217ENST00000555116 E5RGE8 158 aa10.92□□□□□ -0.66
SHMT2-217ENST00000555116 TAAR5O14804 337 aa10.92□□□□□ -0.66
SHMT2-217ENST00000555116 ST8SIA3O43173 380 aa10.92□□□□□ -0.66
SHMT2-217ENST00000555116 DEFA4P12838 97 aa10.92□□□□□ -0.66
SHMT2-217ENST00000555116 ZP3P21754 424 aa10.92□□□□□ -0.66
SHMT2-217ENST00000555116 MFAP2P55001 183 aa10.92□□□□□ -0.66
SHMT2-217ENST00000555116 PRCDQ00LT1 54 aa10.92□□□□□ -0.66
SHMT2-217ENST00000555116 OR4D5Q8NGN0 318 aa10.92□□□□□ -0.66
SHMT2-217ENST00000555116 RNASE11Q8TAA1 199 aaKnown RBP10.92□□□□□ -0.66
SHMT2-217ENST00000555116 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.91□□□□□ -0.66
SHMT2-217ENST00000555116 DUXBA0A1W2PPF3 345 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 HOXD3P31249 432 aaPredicted RBP10.91□□□□□ -0.66
SHMT2-217ENST00000555116 AARDQ4LEZ3 155 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 OR2C3Q8N628 320 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 GPR146Q96CH1 333 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 GPR61Q9BZJ8 451 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 ZC4H2Q9NQZ6 224 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 F11RQ9Y624 299 aaKnown RBP10.91□□□□□ -0.66
SHMT2-217ENST00000555116 KRBOX1C9JBD0 128 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 OVOL1O14753 267 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 WIPF1O43516 503 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 NMSQ5H8A3 153 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 SORL1Q92673 2214 aa10.91□□□□□ -0.66
SHMT2-217ENST00000555116 SEC14L6B5MCN3 397 aa10.9□□□□□ -0.66
SHMT2-217ENST00000555116 TEX46H3BTG2 121 aa10.9□□□□□ -0.66
SHMT2-217ENST00000555116 SPINK9Q5DT21 86 aa10.9□□□□□ -0.66
SHMT2-217ENST00000555116 CCDC140Q96MF4 163 aa10.9□□□□□ -0.66
SHMT2-217ENST00000555116 S4R3C0 116 aa10.9□□□□□ -0.66
SHMT2-217ENST00000555116 DNAH3Q8TD57 4116 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 INS-IGF2F8WCM5 200 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 BMPR1BO00238 502 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 SCO1O75880 301 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 EGFEM1PQ0D2K5 195 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 KLF5Q13887 457 aaPredicted RBP10.89□□□□□ -0.67
SHMT2-217ENST00000555116 C9orf66Q5T8R8 295 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 RPL7L1Q6DKI1 246 aaKnown RBP10.89□□□□□ -0.67
SHMT2-217ENST00000555116 SLC25A24Q6NUK1 477 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 EIF4E3Q8N5X7 224 aaKnown RBP10.89□□□□□ -0.67
SHMT2-217ENST00000555116 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.89□□□□□ -0.67
SHMT2-217ENST00000555116 TMED6Q8WW62 240 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 PLEKHA3Q9HB20 300 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.89□□□□□ -0.67
SHMT2-217ENST00000555116 CACNG5Q9UF02 275 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 FBXL17Q9UF56 701 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 RCL1Q9Y2P8 373 aaKnown RBP10.89□□□□□ -0.67
SHMT2-217ENST00000555116 IFNA17P01571 189 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 IGHV3-23P01764 117 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 P2RY1P47900 373 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 KRTAP10-11P60412 298 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 EIF5AP63241 154 aaKnown RBP10.89□□□□□ -0.67
SHMT2-217ENST00000555116 FAM209BQ5JX69 171 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 ZNF114Q8NC26 417 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 OR1P1Q8NH06 330 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 EEF1AKMT3Q96AZ1 226 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 C11orf1Q9H5F2 150 aa10.89□□□□□ -0.67
SHMT2-217ENST00000555116 CYB5BO43169 146 aa10.88□□□□□ -0.67
SHMT2-217ENST00000555116 PRB2P02812 416 aaPredicted RBP10.88□□□□□ -0.67
SHMT2-217ENST00000555116 NKX2-1P43699 371 aaPredicted RBP10.88□□□□□ -0.67
SHMT2-217ENST00000555116 FAM122CQ6P4D5 195 aa10.88□□□□□ -0.67
SHMT2-217ENST00000555116 OR1L6Q8NGR2 347 aa10.88□□□□□ -0.67
SHMT2-217ENST00000555116 OR52E5Q8NH55 327 aa10.88□□□□□ -0.67
SHMT2-217ENST00000555116 ZNF502Q8TBZ5 544 aa10.88□□□□□ -0.67
SHMT2-217ENST00000555116 VN1R17PQ8TDU5 208 aa10.88□□□□□ -0.67
SHMT2-217ENST00000555116 THYN1Q9P016 225 aa10.88□□□□□ -0.67
SHMT2-217ENST00000555116 TRBV7-1A0A0A6YYK4 115 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 PIGBOS1A0A0B4J2F0 54 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 PPP5D1E7EU14 171 aa10.87□□□□□ -0.67
SHMT2-217ENST00000555116 SPCS3P61009 180 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms