RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 WDR83OSQ9Y284 106 aa9.1□□□□□ -0.95
VPS33B-204ENST00000554660 TRBV23-1A0A0A0MS06 115 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 FNDC10F2Z333 226 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 C15orf65H3BRN8 121 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 MGST3O14880 152 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 PDE6DO43924 150 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST1H2BKO60814 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 NXPH3O95157 252 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HPRT1P00492 218 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 TYMSP04818 313 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST1H2BJP06899 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 PF4V1P10720 104 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 CCL3L1P16619 93 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST1H2BOP23527 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST1H2BBP33778 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST1H2BDP58876 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 KRTAP10-11P60412 298 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 SPCS3P61009 180 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST1H2BCP62807 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST2H2BEQ16778 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 ARSJQ5FYB0 599 aaPredicted RBP9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.09□□□□□ -0.95
VPS33B-204ENST00000554660 SLC16A13Q7RTY0 426 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST1H2BHQ93079 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 SNX22Q96L94 193 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 WWC2-AS2Q96NR7 200 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 IMMP2LQ96T52 175 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST1H2BNQ99877 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 HIST1H2BMQ99879 126 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 NPCDR1Q9BY65 106 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 WNT10AQ9GZT5 417 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 VSIRQ9H7M9 311 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 PITPNC1Q9UKF7 332 aa9.09□□□□□ -0.95
VPS33B-204ENST00000554660 EPPK1P58107 5090 aaKnown RBP9.09□□□□□ -0.95
VPS33B-204ENST00000554660 F6UZH7 168 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 F2RL2O00254 374 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 PHOX2AO14813 284 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 GATCO43716 136 aaKnown RBP9.08□□□□□ -0.96
VPS33B-204ENST00000554660 S1PR2O95136 353 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 PFN1P07737 140 aaKnown RBP9.08□□□□□ -0.96
VPS33B-204ENST00000554660 FGF7P21781 194 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 RAB7AP51149 207 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 ATP5IP56385 69 aaPredicted RBP9.08□□□□□ -0.96
VPS33B-204ENST00000554660 LGALS4P56470 323 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 RPL30P62888 115 aaKnown RBP9.08□□□□□ -0.96
VPS33B-204ENST00000554660 CD69Q07108 199 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 IZUMO4Q1ZYL8 232 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 BSXQ3C1V8 233 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 ACSM6Q6P461 480 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 PRR18Q8N4B5 295 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 C11orf42Q8N5U0 333 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 WFDC9Q8NEX5 89 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 OR10A7Q8NGE5 316 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 OR10G9Q8NGN4 311 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 OR10G7Q8NGN6 311 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 C5orf30Q96GV9 206 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 SMIM7Q9BQ49 75 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 ARL2-SNX15V9GYD0 113 aa9.08□□□□□ -0.96
VPS33B-204ENST00000554660 TGIF2-C20orf24A0A0A6YYL0 155 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 A6NDX4 124 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 MARCH11A6NNE9 402 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 C17orf98A8MV24 154 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 RAMP3O60896 148 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 KRASP01116 189 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 IGKV1D-33P01593 117 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 IGKV1-33P01594 117 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 PF4P02776 101 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 HOXD3P31249 432 aaPredicted RBP9.07□□□□□ -0.96
VPS33B-204ENST00000554660 DUTP33316 252 aaKnown RBP9.07□□□□□ -0.96
VPS33B-204ENST00000554660 G6PCP35575 357 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 VDAC2P45880 294 aaPredicted RBP9.07□□□□□ -0.96
VPS33B-204ENST00000554660 CEBPDP49716 269 aaPredicted RBP9.07□□□□□ -0.96
VPS33B-204ENST00000554660 CEBPGP53567 150 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 FAM3BP58499 235 aaPredicted RBP9.07□□□□□ -0.96
VPS33B-204ENST00000554660 BRWD1-AS2P59051 145 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 RPL31P62899 125 aaKnown RBP9.07□□□□□ -0.96
VPS33B-204ENST00000554660 COL10A1Q03692 680 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 FFAR4Q5NUL3 377 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 LDLRAD2Q5SZI1 272 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 SSX7Q7RTT5 188 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 HIST3H2BBQ8N257 126 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 OR52L2PQ8NGH6 319 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 RNASEH2CQ8TDP1 164 aaKnown RBP9.07□□□□□ -0.96
VPS33B-204ENST00000554660 ACY3Q96HD9 319 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 ADTRPQ96IZ2 230 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 OR5B12Q96R08 314 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 PRSS22Q9GZN4 317 aa9.07□□□□□ -0.96
VPS33B-204ENST00000554660 TRAV39A0A0B4J263 110 aa9.06□□□□□ -0.96
VPS33B-204ENST00000554660 ZNF729A6NN14 1252 aaPredicted RBP9.06□□□□□ -0.96
VPS33B-204ENST00000554660 C15orf62A8K5M9 175 aa9.06□□□□□ -0.96
VPS33B-204ENST00000554660 GGCTO75223 188 aaKnown RBP9.06□□□□□ -0.96
VPS33B-204ENST00000554660 HRASP01112 189 aa9.06□□□□□ -0.96
VPS33B-204ENST00000554660 PRDX2P32119 198 aa9.06□□□□□ -0.96
VPS33B-204ENST00000554660 OPRK1P41145 380 aa9.06□□□□□ -0.96
VPS33B-204ENST00000554660 CDC34P49427 236 aaPredicted RBP9.06□□□□□ -0.96
VPS33B-204ENST00000554660 ELLP55199 621 aaPredicted RBP9.06□□□□□ -0.96
VPS33B-204ENST00000554660 NDUFA6P56556 154 aa9.06□□□□□ -0.96
VPS33B-204ENST00000554660 ERVK-16P61578 105 aa9.06□□□□□ -0.96
VPS33B-204ENST00000554660 RPL23P62829 140 aaKnown RBP9.06□□□□□ -0.96
VPS33B-204ENST00000554660 BLCAPP62952 87 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms