RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 ST8SIA2Q92186 375 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 RBPMSQ93062 196 aaKnown RBP12.09□□□□□ -0.47
VPS29-207ENST00000549970 GALNT14Q96FL9 552 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 PRRT1Q99946 306 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 FNDC4Q9H6D8 234 aaPredicted RBP12.09□□□□□ -0.47
VPS29-207ENST00000549970 ZFAND3Q9H8U3 227 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 MRPL36Q9P0J6 103 aaKnown RBP12.09□□□□□ -0.47
VPS29-207ENST00000549970 GPR132Q9UNW8 380 aa12.09□□□□□ -0.47
VPS29-207ENST00000549970 IGHV3-66A0A0C4DH42 116 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 KIR2DL5BA0A0G2JN68 375 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 KIR2DL5BA0A0G2JPC4 375 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 UBE2CO00762 179 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 NOL3O60936 208 aaKnown RBP12.08□□□□□ -0.48
VPS29-207ENST00000549970 JTBO76095 146 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 TMEM50AO95807 157 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 APOHP02749 345 aaPredicted RBP12.08□□□□□ -0.48
VPS29-207ENST00000549970 BMI1P35226 326 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 SPCS3P61009 180 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 MLANAQ16655 118 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 FAM90A2PQ658T7 463 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 SELENOHQ8IZQ5 122 aaKnown RBP12.08□□□□□ -0.48
VPS29-207ENST00000549970 KIR2DL5AQ8N109 375 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 OR51S1Q8NGJ8 323 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 KIR2DL5BQ8NHK3 375 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 BCL7BQ9BQE9 202 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.08□□□□□ -0.48
VPS29-207ENST00000549970 RABL2AQ9UBK7 228 aaPredicted RBP12.08□□□□□ -0.48
VPS29-207ENST00000549970 CACNG5Q9UF02 275 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 RABL2BQ9UNT1 228 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 TP53TG1Q9Y2A0 90 aa12.08□□□□□ -0.48
VPS29-207ENST00000549970 A0A0J9YWU9 116 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 A0A1B0GU03 582 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 CRYM-AS1A6NIL9 109 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 PAFAH1B2P68402 229 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 DHODHQ02127 395 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 TMEM268Q5VZI3 342 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 WFDC3Q8IUB2 231 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 LILRB2Q8N423 598 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 GPR146Q96CH1 333 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 VSIRQ9H7M9 311 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 MAP6D1Q9H9H5 199 aa12.07□□□□□ -0.48
VPS29-207ENST00000549970 ANKRD20A5PA0PJZ0 165 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 CLN5O75503 358 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 NXPH3O95157 252 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 RPL11P62913 178 aaKnown RBP12.06□□□□□ -0.48
VPS29-207ENST00000549970 PMS2P11Q13670 270 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 BSXQ3C1V8 233 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 AARDQ4LEZ3 155 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 LYG2Q86SG7 212 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 OR4X1Q8NH49 305 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 OR52E5Q8NH55 327 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 RNF183Q96D59 192 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 SLIRPQ9GZT3 109 aaKnown RBP12.06□□□□□ -0.48
VPS29-207ENST00000549970 HEYLQ9NQ87 328 aaPredicted RBP12.06□□□□□ -0.48
VPS29-207ENST00000549970 MCUBQ9NWR8 336 aa12.06□□□□□ -0.48
VPS29-207ENST00000549970 CEBPZOSA8MTT3 80 aa12.05□□□□□ -0.48
VPS29-207ENST00000549970 H3BMQ9 156 aa12.05□□□□□ -0.48
VPS29-207ENST00000549970 DNASE2O00115 360 aaPredicted RBP12.05□□□□□ -0.48
VPS29-207ENST00000549970 GSTZ1O43708 216 aaPredicted RBP12.05□□□□□ -0.48
VPS29-207ENST00000549970 DFFBO76075 338 aa12.05□□□□□ -0.48
VPS29-207ENST00000549970 CD5P06127 495 aa12.05□□□□□ -0.48
VPS29-207ENST00000549970 HTR2BP41595 481 aa12.05□□□□□ -0.48
VPS29-207ENST00000549970 RPL5P46777 297 aaKnown RBP12.05□□□□□ -0.48
VPS29-207ENST00000549970 CMC4P56277 68 aaPredicted RBP12.05□□□□□ -0.48
VPS29-207ENST00000549970 EWSR1Q01844 656 aaKnown RBP eCLIP12.05□□□□□ -0.48
VPS29-207ENST00000549970 MS4A6AQ9H2W1 248 aa12.05□□□□□ -0.48
VPS29-207ENST00000549970 PRR13Q9NZ81 148 aa12.05□□□□□ -0.48
VPS29-207ENST00000549970 RSL24D1Q9UHA3 163 aaKnown RBP12.05□□□□□ -0.48
VPS29-207ENST00000549970 SCP2D1Q9UJQ7 156 aa12.05□□□□□ -0.48
VPS29-207ENST00000549970 EPPK1P58107 5090 aaKnown RBP12.05□□□□□ -0.48
VPS29-207ENST00000549970 RPS10-NUDT3A0A1W2PQS6 291 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 CXorf65A6NEN9 183 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 FABP12A6NFH5 140 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 SCGB2A1O75556 95 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 NPPCP23582 126 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 TNFSF8P32971 234 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 TNFRSF9Q07011 255 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 TIGITQ495A1 244 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 MCFD2Q8NI22 146 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 TMEM230Q96A57 120 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 METTL26Q96S19 204 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 TMEM231Q9H6L2 316 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 TMEM56-RWDD3S4R434 201 aa12.04□□□□□ -0.48
VPS29-207ENST00000549970 IGKV1-17P01599 117 aa12.03□□□□□ -0.48
VPS29-207ENST00000549970 TMEM187Q14656 261 aa12.03□□□□□ -0.48
VPS29-207ENST00000549970 SLC24A4Q8NFF2 622 aa12.03□□□□□ -0.48
VPS29-207ENST00000549970 SCGB3A2Q96PL1 93 aa12.03□□□□□ -0.48
VPS29-207ENST00000549970 CSTL1Q9H114 145 aa12.03□□□□□ -0.48
VPS29-207ENST00000549970 RABAC1Q9UI14 185 aa12.03□□□□□ -0.48
VPS29-207ENST00000549970 KCNIP3Q9Y2W7 256 aa12.03□□□□□ -0.48
VPS29-207ENST00000549970 A0A1W2PS18 150 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 SULT1A3P0DMM9 295 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 SULT1A4P0DMN0 295 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 AKR1C4P17516 323 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 RND2P52198 227 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 DEFB131AP59861 70 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 C2orf83Q53S99 150 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 LEMD1Q68G75 181 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 FAM24BQ8N5W8 94 aa12.02□□□□□ -0.49
VPS29-207ENST00000549970 IL22RA2Q969J5 263 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms