RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 ZFAND1Q8TCF1 268 aa9.33□□□□□ -0.92
USP28-212ENST00000544750 RNF2Q99496 336 aa9.33□□□□□ -0.92
USP28-212ENST00000544750 QTRT1Q9BXR0 403 aaKnown RBP9.33□□□□□ -0.92
USP28-212ENST00000544750 SMPXQ9UHP9 88 aa9.33□□□□□ -0.92
USP28-212ENST00000544750 IGHV3OR16-8A0A075B7F1 116 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 A0A0G2JRQ6 117 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 C3orf85A0A1B0GTC6 90 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 PRSS29PA6NIE9 313 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 C15orf62A8K5M9 175 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 ZNF207O43670 478 aaKnown RBP9.32□□□□□ -0.92
USP28-212ENST00000544750 UCP1P25874 307 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 S100A5P33763 92 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 CMC4P56277 68 aaPredicted RBP9.32□□□□□ -0.92
USP28-212ENST00000544750 SP6Q3SY56 376 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 PYDC2Q56P42 97 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 FAM90A2PQ658T7 463 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 THOC7Q6I9Y2 204 aaKnown RBP9.32□□□□□ -0.92
USP28-212ENST00000544750 GDPD1Q8N9F7 314 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 CCDC71LQ8N9Z2 235 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 OR1L8Q8NGR8 309 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 LHFPL5Q8TAF8 219 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 TMEM230Q96A57 120 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 PRRT1Q99946 306 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 SRRQ9GZT4 340 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 COPZ2Q9P299 210 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 PRNDQ9UKY0 176 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 OR51B2Q9Y5P1 312 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 LRP1BQ9NZR2 4599 aa9.32□□□□□ -0.92
USP28-212ENST00000544750 IGHV7-4-1A0A0J9YVY3 117 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 CRYM-AS1A6NIL9 109 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 CHEK1O14757 476 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 SNAPC5O75971 98 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 SERPINE2P07093 398 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 TRAPPC2P0DI81 140 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 TRAPPC2BP0DI82 140 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 RBMY1A1P0DJD3 496 aaKnown RBP9.31□□□□□ -0.92
USP28-212ENST00000544750 RBMY1CP0DJD4 496 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 RBMY1FQ15415 496 aaKnown RBP9.31□□□□□ -0.92
USP28-212ENST00000544750 H2BFWTQ7Z2G1 175 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 GLYATL2Q8WU03 294 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 SDHCQ99643 169 aaPredicted RBP9.31□□□□□ -0.92
USP28-212ENST00000544750 C20orf24Q9BUV8 137 aa9.31□□□□□ -0.92
USP28-212ENST00000544750 C14orf166Q9Y224 244 aaKnown RBP9.31□□□□□ -0.92
USP28-212ENST00000544750 IGHV4-4A0A075B6R2 117 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 K7EIM0 57 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 CA1P00915 261 aaPredicted RBP9.3□□□□□ -0.92
USP28-212ENST00000544750 CTSGP08311 255 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 GIG44P09565 113 aaPredicted RBP9.3□□□□□ -0.92
USP28-212ENST00000544750 OR5AC1P0C628 307 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 OR13C7P0DN81 318 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 TMEM187Q14656 261 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 SCARB1Q8WTV0 552 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 LSM10Q969L4 123 aaKnown RBP9.3□□□□□ -0.92
USP28-212ENST00000544750 OR10C1Q96KK4 312 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 TSC22D3Q99576 134 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 RHPN1-AS1Q9BWJ2 59 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 TMEM222Q9H0R3 208 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 NAA60Q9H7X0 242 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 MCUBQ9NWR8 336 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 C21orf62Q9NYP8 219 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 NDUFA13Q9P0J0 144 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 SCP2D1Q9UJQ7 156 aa9.3□□□□□ -0.92
USP28-212ENST00000544750 IGHV3-21A0A0B4J1V1 117 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 A0A0B4J293 547 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 B3GALNT1O75752 331 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 CDS2O95674 445 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 HLA-DMBP28068 263 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 TFPI2P48307 235 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 SUPT4H1P63272 117 aaKnown RBP9.29□□□□□ -0.92
USP28-212ENST00000544750 PRCDQ00LT1 54 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 BAK1Q16611 211 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 TRIM16LQ309B1 348 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 SPANXN2Q5MJ10 180 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 SLC25A24Q6NUK1 477 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 Q6ZTC4 211 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 HSD17B13Q7Z5P4 300 aaPredicted RBP9.29□□□□□ -0.92
USP28-212ENST00000544750 RNF126Q9BV68 326 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 HINT2Q9BX68 163 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 FKBP11Q9NYL4 201 aa9.29□□□□□ -0.92
USP28-212ENST00000544750 F11RQ9Y624 299 aaKnown RBP9.29□□□□□ -0.92
USP28-212ENST00000544750 TRAV10A0A0B4J240 114 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 IGHV4-28A0A0C4DH34 117 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 TEX13DA0A0J9YY54 714 aaPredicted RBP9.28□□□□□ -0.92
USP28-212ENST00000544750 AKR1C2P52895 323 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 PVRIGQ6DKI7 326 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 Q6ZRM9 215 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 SELENOHQ8IZQ5 122 aaKnown RBP9.28□□□□□ -0.92
USP28-212ENST00000544750 TOMM5Q8N4H5 51 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 POM121L12Q8N7R1 296 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 TMEM116Q8NCL8 245 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 OR4A16Q8NH70 328 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 PRR13Q9NZ81 148 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 NACAE9PAV3 2078 aa9.28□□□□□ -0.92
USP28-212ENST00000544750 IGKV3-7A0A075B6H7 116 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 ELOA3CA0A087WX78 387 aaPredicted RBP9.27□□□□□ -0.93
USP28-212ENST00000544750 IGHV3-49A0A0A0MS15 119 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 ZNF705EA8MWA4 302 aaPredicted RBP9.27□□□□□ -0.93
USP28-212ENST00000544750 CYB5BO43169 146 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 ST8SIA3O43173 380 aa9.27□□□□□ -0.93
USP28-212ENST00000544750 AMBPP02760 352 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms