RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 U3KQ87 197 aa6.64□□□□□ -1.35
CLSTN3-212ENST00000541770 C7orf66A4D0T2 115 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 RBMY1BA6NDE4 496 aaKnown RBP6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 RBMY1EA6NEQ0 496 aaKnown RBP6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 LINC01619G3V211 115 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 K7EIM0 57 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 SYNGR2O43760 224 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 NXPH3O95157 252 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 RBMY1DP0C7P1 496 aaKnown RBP6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 ZP3P21754 424 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 NKX2-1P43699 371 aaPredicted RBP6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 TATDN3Q17R31 274 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 ZBTB8BQ8NAP8 495 aaPredicted RBP6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 UXS1Q8NBZ7 420 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 SLC24A4Q8NFF2 622 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 ZNF502Q8TBZ5 544 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 OR10C1Q96KK4 312 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 C2orf50Q96LR7 162 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 CIB3Q96Q77 187 aaPredicted RBP6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 PEF1Q9UBV8 284 aaKnown RBP6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 DNAH1Q9P2D7 4330 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 STAB2Q8WWQ8 2551 aa6.63□□□□□ -1.35
CLSTN3-212ENST00000541770 HYDINQ4G0P3 5121 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 IGHV4OR15-8A0A075B7B6 117 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 A0A087WW49 117 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 ANKRD34BA5PLL1 514 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 C5orf51A6NDU8 294 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 MFSD2BA6NFX1 497 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 I3L2K1 104 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 CCSO14618 274 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 NPY1RP25929 384 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 FCGR2BP31994 310 aaPredicted RBP6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 GSG1LQ6UXU4 331 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 RNASEH2CQ8TDP1 164 aaKnown RBP6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 SCARB1Q8WTV0 552 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 MISP3Q96FF7 219 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 CCDC140Q96MF4 163 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 TXN2Q99757 166 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 CSMD3Q7Z407 3707 aa6.62□□□□□ -1.35
CLSTN3-212ENST00000541770 LYSTQ99698 3801 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 STARD9Q9P2P6 4700 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 BMPR1BO00238 502 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 WRBO00258 174 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 GGCTO75223 188 aaKnown RBP6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 MT-CO2P00403 227 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 IFNA10P01566 189 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 TRBV12-3P01733 135 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 CLEC3BP05452 202 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 POLR2GP62487 172 aaKnown RBP eCLIP6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 RPP30P78346 268 aaKnown RBP6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 IL15RAQ13261 267 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 KLF5Q13887 457 aaPredicted RBP6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 ACSM6Q6P461 480 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 SPSB3Q6PJ21 355 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 CLEC19AQ6UXS0 136 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 TMEM170AQ8WVE7 144 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 BSCL2Q96G97 398 aaPredicted RBP6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 FAM110AQ9BQ89 295 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 TUBA4BQ9H853 241 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 RETNQ9HD89 108 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 C21orf62Q9NYP8 219 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 GSKIPQ9P0R6 139 aa6.61□□□□□ -1.35
CLSTN3-212ENST00000541770 RPS10-NUDT3A0A1W2PQS6 291 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 C15orf62A8K5M9 175 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 FAM25EA8MYX2 175 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 F8W735 103 aaPredicted RBP6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 SSNA1O43805 119 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 IGHV3-23P01764 117 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 MBPP02686 304 aaPredicted RBP6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 IAPPP10997 89 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 ARL3P36405 182 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 OPRK1P41145 380 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 MFAP4P55083 255 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 TAS2R30P59541 319 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 CYCSP99999 105 aaKnown RBP6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 HAGHQ16775 308 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 RPEL1Q2QD12 228 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 GPHB5Q86YW7 130 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 Q8N1Y9 231 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 IL17DQ8TAD2 202 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 PINX1Q96BK5 328 aaKnown RBP6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 SMIM8Q96KF7 97 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 RAB40CQ96S21 281 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 ELOVL1Q9BW60 279 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 NMES1Q9C002 83 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 MAGT1Q9H0U3 335 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 FNDC4Q9H6D8 234 aaPredicted RBP6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 C19orf73Q9NVV2 129 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 RCL1Q9Y2P8 373 aaKnown RBP6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 ALG5Q9Y673 324 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 S4R3C0 116 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 DNAH7Q8WXX0 4024 aa6.6□□□□□ -1.35
CLSTN3-212ENST00000541770 IGHV3-21A0A0B4J1V1 117 aa6.59□□□□□ -1.35
CLSTN3-212ENST00000541770 OR2T8A6NH00 312 aa6.59□□□□□ -1.35
CLSTN3-212ENST00000541770 PPP5D1E7EU14 171 aa6.59□□□□□ -1.35
CLSTN3-212ENST00000541770 K7EPK0 472 aa6.59□□□□□ -1.35
CLSTN3-212ENST00000541770 LGALS9O00182 355 aa6.59□□□□□ -1.35
CLSTN3-212ENST00000541770 GOSR2O14653 212 aa6.59□□□□□ -1.35
CLSTN3-212ENST00000541770 TGOLN2O43493 480 aa6.59□□□□□ -1.35
CLSTN3-212ENST00000541770 SSSCA1O60232 199 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms