RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 ZNF841Q6ZN19 808 aa7.85□□□□□ -1.15
CLIP1-212ENST00000540304 OR9G1Q8NH87 305 aa7.85□□□□□ -1.15
CLIP1-212ENST00000540304 NEU4Q8WWR8 484 aaPredicted RBP7.85□□□□□ -1.15
CLIP1-212ENST00000540304 SCRT1Q9BWW7 348 aa7.85□□□□□ -1.15
CLIP1-212ENST00000540304 HEYLQ9NQ87 328 aaPredicted RBP7.85□□□□□ -1.15
CLIP1-212ENST00000540304 TMEM14BQ9NUH8 114 aa7.85□□□□□ -1.15
CLIP1-212ENST00000540304 TCF19Q9Y242 345 aa7.85□□□□□ -1.15
CLIP1-212ENST00000540304 TIMM9Q9Y5J7 89 aa7.85□□□□□ -1.15
CLIP1-212ENST00000540304 A0A1B0GW64 132 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 IGKV1-16P04430 117 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 TMEM241Q24JQ0 296 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 VWC2Q2TAL6 325 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 SPSB3Q6PJ21 355 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 EIF5A2Q9GZV4 153 aaKnown RBP7.84□□□□□ -1.15
CLIP1-212ENST00000540304 ACACBO00763 2458 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 H0Y8G0 127 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 H0YJW9 148 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 ZNF137PP52743 207 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 DLX1P56177 255 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 HSPE1P61604 102 aaKnown RBP7.84□□□□□ -1.15
CLIP1-212ENST00000540304 DLK1P80370 383 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 PSG3Q16557 428 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 CENPVQ7Z7K6 275 aaPredicted RBP7.84□□□□□ -1.15
CLIP1-212ENST00000540304 DTX2Q86UW9 622 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 ABHD12Q8N2K0 398 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 OR8B3Q8NGG8 313 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 OR5AN1Q8NGI8 311 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 OR1P1Q8NH06 330 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 OSR1Q8TAX0 266 aaPredicted RBP7.84□□□□□ -1.15
CLIP1-212ENST00000540304 TIMD4Q96H15 378 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 OR8B2Q96RD0 313 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 C20orf144Q9BQM9 153 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 TMEM133Q9H2Q1 129 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 PRNDQ9UKY0 176 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 MED13LQ71F56 2210 aa7.84□□□□□ -1.15
CLIP1-212ENST00000540304 ZFYVE26Q68DK2 2539 aa7.84□□□□□ -1.16
CLIP1-212ENST00000540304 ZNF705FA8MVS1 300 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-212ENST00000540304 HBE1P02100 147 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 ZNF705DP0CH99 300 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-212ENST00000540304 ZNF705BP0CI00 300 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-212ENST00000540304 VAMP3Q15836 100 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 SP5Q6BEB4 398 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-212ENST00000540304 RAB1CQ92928 201 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 ST6GALNAC6Q969X2 333 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 NEIL1Q96FI4 390 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-212ENST00000540304 RPRMQ9NS64 109 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 FKBP11Q9NYL4 201 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 UPK2O00526 184 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 OR7C2O60412 319 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 LY6HO94772 140 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 RBP4P02753 201 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 SCGB1A1P11684 91 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 MDKP21741 143 aaPredicted RBP7.83□□□□□ -1.16
CLIP1-212ENST00000540304 IL3RAP26951 378 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 REG1BP48304 166 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 CCL20P78556 96 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 SMAGPQ0VAQ4 97 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 PMS2P11Q13670 270 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 TMEM41BQ5BJD5 291 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 TCF24Q7RTU0 167 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 PDPNQ86YL7 162 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 C8orf46Q8TAG6 207 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 TBX15Q96SF7 602 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 NABP2Q9BQ15 211 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 ENY2Q9NPA8 101 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 BET1LQ9NYM9 111 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 KIAA1456Q9P272 454 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 ZNF257Q9Y2Q1 563 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 OR51B2Q9Y5P1 312 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 MALRD1Q5VYJ5 2156 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 PLXNB1O43157 2135 aa7.83□□□□□ -1.16
CLIP1-212ENST00000540304 MAP1AP78559 2803 aaPredicted RBP7.82□□□□□ -1.16
CLIP1-212ENST00000540304 TRAV1-1A0A0B4J248 108 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 SRRM4A7MD48 611 aaKnown RBP7.82□□□□□ -1.16
CLIP1-212ENST00000540304 AZU1P20160 251 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 PAX2Q02962 417 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 WDR25Q64LD2 544 aaPredicted RBP7.82□□□□□ -1.16
CLIP1-212ENST00000540304 HARBI1Q96MB7 349 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 SMDT1Q9H4I9 107 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 VSIRQ9H7M9 311 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 YAE1D1Q9NRH1 226 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 SLC45A2Q9UMX9 530 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 IGSF10Q6WRI0 2623 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 FLNCQ14315 2725 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 RBFOX3A6NFN3 312 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 RRHO14718 337 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 KBTBD11O94819 623 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 SAA1P0DJI8 122 aaPredicted RBP7.82□□□□□ -1.16
CLIP1-212ENST00000540304 OR13C7P0DN81 318 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 MYOD1P15172 320 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 RAB11AP62491 216 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 OR4C13Q8NGP0 309 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 LHX4Q969G2 390 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 FLYWCH2Q96CP2 140 aaKnown RBP7.82□□□□□ -1.16
CLIP1-212ENST00000540304 NPCDR1Q9BY65 106 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 WASHC3Q9Y3C0 194 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 PAM16Q9Y3D7 125 aa7.82□□□□□ -1.16
CLIP1-212ENST00000540304 UTP20O75691 2785 aaKnown RBP7.82□□□□□ -1.16
CLIP1-212ENST00000540304 NAV3Q8IVL0 2385 aa7.81□□□□□ -1.16
CLIP1-212ENST00000540304 IGHV2-26A0A0B4J1V2 119 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms