RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 OR2D2Q9H210 308 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 AAMDCQ9H7C9 122 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 TECRQ9NZ01 308 aaKnown RBP5.4□□□□□ -1.54
USP28-202ENST00000535607 ZNF581Q9P0T4 197 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 HSPB8Q9UJY1 196 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 V9GYV3 84 aa5.4□□□□□ -1.54
USP28-202ENST00000535607 SDK2Q58EX2 2172 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 IGHV1-45A0A0A0MS14 117 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 TRAV38-1A0A0B4J264 116 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 TRAV34A0A0B4J273 112 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 IGHV3-20A0A0C4DH32 117 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 A0A1B0GUS0 222 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 SMIM27A0A1W2PRY6 76 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 GAGE10A6NGK3 116 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 OOEPA6NGQ2 149 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 J3QR89 54 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 B4GALT1P15291 398 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 G6PCP35575 357 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 SSR4P51571 173 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 CEACAM16Q2WEN9 425 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 CENPWQ5EE01 88 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 IBA57Q5T440 356 aaKnown RBP5.39□□□□□ -1.55
USP28-202ENST00000535607 TCF24Q7RTU0 167 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 MTURNQ8N3F0 131 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 OR8B3Q8NGG8 313 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 OR1L1Q8NH94 360 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 GRAMD2BQ96HH9 432 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 CYYR1Q96J86 154 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 OR8B2Q96RD0 313 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 MAP1LC3CQ9BXW4 147 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 OR1A1Q9P1Q5 309 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 WASHC3Q9Y3C0 194 aa5.39□□□□□ -1.55
USP28-202ENST00000535607 MYO7BQ6PIF6 2116 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 TRAV24A0A0B4J272 114 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 A0A1W2PRE2 83 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 TMEM238C9JI98 176 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 CORTO00230 105 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 SLC17A3O00476 420 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 OR7C2O60412 319 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 ZG16O60844 167 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 MRPL33O75394 65 aaKnown RBP5.38□□□□□ -1.55
USP28-202ENST00000535607 OR2J3O76001 311 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 NEURL1O76050 574 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 P04436 131 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 LIPFP07098 398 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 P0C879 139 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 SMIM17P0DL12 118 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 HIST1H1EP10412 219 aaKnown RBP5.38□□□□□ -1.55
USP28-202ENST00000535607 COX6A1P12074 109 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 ANOS1P23352 680 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 CRYBB3P26998 211 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 BMI1P35226 326 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 CEACAM3P40198 252 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 MLF1P58340 268 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 DAZAP2Q15038 168 aaPredicted RBP5.38□□□□□ -1.55
USP28-202ENST00000535607 IZUMO4Q1ZYL8 232 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 SMIM21Q3B7S5 101 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 Q56UQ5 140 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 SPATA46Q5T0L3 261 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 RNASEKQ6P5S7 137 aaKnown RBP5.38□□□□□ -1.55
USP28-202ENST00000535607 C16orf47Q6ZP98 133 aaPredicted RBP5.38□□□□□ -1.55
USP28-202ENST00000535607 SHISA6Q6ZSJ9 500 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 FAM231DQ6ZW35 169 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 BATF2Q8N1L9 274 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 ST6GALNAC3Q8NDV1 305 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 OR5A1Q8NGJ0 315 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 SLC25A40Q8TBP6 338 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 TNFRSF14Q92956 283 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 DERL1Q9BUN8 251 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 CLEC7AQ9BXN2 247 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 MRPL32Q9BYC8 188 aaKnown RBP5.38□□□□□ -1.55
USP28-202ENST00000535607 IL36RNQ9UBH0 155 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 RPH3ALQ9UNE2 315 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 CHCHD2Q9Y6H1 151 aaPredicted RBP5.38□□□□□ -1.55
USP28-202ENST00000535607 CNOT1A5YKK6 2376 aaKnown RBP5.38□□□□□ -1.55
USP28-202ENST00000535607 KIAA1549Q9HCM3 1950 aa5.38□□□□□ -1.55
USP28-202ENST00000535607 TNRC6AQ8NDV7 1962 aaKnown RBP5.37□□□□□ -1.55
USP28-202ENST00000535607 IGHV3-15A0A0B4J1V0 119 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 TRGV8A0A0C4DH27 118 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 A0A0J9YW62 118 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 C5orf49A4QMS7 147 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 OR4C46A6NHA9 309 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 C15orf62A8K5M9 175 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 K7EN84 100 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 BMPR1BO00238 502 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 CRXO43186 299 aaPredicted RBP5.37□□□□□ -1.55
USP28-202ENST00000535607 SPINT2O43291 252 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 ZIC3O60481 467 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 NGFP01138 241 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 HBZP02008 142 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 CELA2AP08217 269 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 MGST1P10620 155 aaKnown RBP5.37□□□□□ -1.55
USP28-202ENST00000535607 CCNOP22674 350 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 GPR12P47775 334 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 PPOXP50336 477 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 ARG2P78540 354 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 PAX2Q02962 417 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 MZT1Q08AG7 82 aa5.37□□□□□ -1.55
USP28-202ENST00000535607 ZNF816Q0VGE8 651 aaPredicted RBP5.37□□□□□ -1.55
USP28-202ENST00000535607 OR1C1Q15619 314 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms