RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 TMEM50AO95807 157 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 APOHP02749 345 aaPredicted RBP10.84□□□□□ -0.67
VPS28-215ENST00000531924 TAS2R19P59542 299 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 DEFB131AP59861 70 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 LEMD1Q68G75 181 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 STHQ8IWL8 128 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 TMEM229BQ8NBD8 167 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 OR13C8Q8NGS7 320 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 C11orf45Q8TAV5 145 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 VSIRQ9H7M9 311 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 FBXL17Q9UF56 701 aa10.84□□□□□ -0.67
VPS28-215ENST00000531924 C14orf166Q9Y224 244 aaKnown RBP10.84□□□□□ -0.67
VPS28-215ENST00000531924 TRAV2A0A0B4J234 112 aa10.83□□□□□ -0.68
VPS28-215ENST00000531924 TEX13DA0A0J9YY54 714 aaPredicted RBP10.83□□□□□ -0.68
VPS28-215ENST00000531924 RPS10-NUDT3A0A1W2PQS6 291 aa10.83□□□□□ -0.68
VPS28-215ENST00000531924 RGS5O15539 181 aa10.83□□□□□ -0.68
VPS28-215ENST00000531924 RNASE2P10153 161 aaKnown RBP10.83□□□□□ -0.68
VPS28-215ENST00000531924 TMEM187Q14656 261 aa10.83□□□□□ -0.68
VPS28-215ENST00000531924 RBMS2Q15434 407 aaKnown RBP10.83□□□□□ -0.68
VPS28-215ENST00000531924 STEAP1BQ6NZ63 245 aa10.83□□□□□ -0.68
VPS28-215ENST00000531924 STXBP6Q8NFX7 210 aa10.83□□□□□ -0.68
VPS28-215ENST00000531924 GRAMD2BQ96HH9 432 aa10.83□□□□□ -0.68
VPS28-215ENST00000531924 ZNF414Q96IQ9 312 aa10.83□□□□□ -0.68
VPS28-215ENST00000531924 A0A1B0GU03 582 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 CLN5O75503 358 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 P0C879 139 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 UCP1P25874 307 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 EIF2B2P49770 351 aaKnown RBP10.82□□□□□ -0.68
VPS28-215ENST00000531924 SPCS3P61009 180 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 MEF2DQ14814 521 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 GPR107Q5VW38 600 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 CENPSQ8N2Z9 138 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 OR4D10Q8NGI6 311 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 MARCH1Q8TCQ1 289 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 ABHD1Q96SE0 405 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 ZFAND3Q9H8U3 227 aa10.82□□□□□ -0.68
VPS28-215ENST00000531924 HEYLQ9NQ87 328 aaPredicted RBP10.82□□□□□ -0.68
VPS28-215ENST00000531924 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.82□□□□□ -0.68
VPS28-215ENST00000531924 TRAV30A0A087WSZ9 112 aa10.81□□□□□ -0.68
VPS28-215ENST00000531924 DISC1C4P0D8 188 aa10.81□□□□□ -0.68
VPS28-215ENST00000531924 GABARAPH6UMI1 98 aa10.81□□□□□ -0.68
VPS28-215ENST00000531924 GABARAPO95166 117 aa10.81□□□□□ -0.68
VPS28-215ENST00000531924 HTR2BP41595 481 aa10.81□□□□□ -0.68
VPS28-215ENST00000531924 RPL5P46777 297 aaKnown RBP10.81□□□□□ -0.68
VPS28-215ENST00000531924 NANOS2P60321 138 aaKnown RBP10.81□□□□□ -0.68
VPS28-215ENST00000531924 CTF1Q16619 201 aa10.81□□□□□ -0.68
VPS28-215ENST00000531924 FAM219AQ8IW50 185 aa10.81□□□□□ -0.68
VPS28-215ENST00000531924 LILRB2Q8N423 598 aa10.81□□□□□ -0.68
VPS28-215ENST00000531924 OR4X1Q8NH49 305 aa10.81□□□□□ -0.68
VPS28-215ENST00000531924 NAA50Q9GZZ1 169 aaKnown RBP10.81□□□□□ -0.68
VPS28-215ENST00000531924 C11orf68Q9H3H3 251 aaKnown RBP10.81□□□□□ -0.68
VPS28-215ENST00000531924 CEBPZOSA8MTT3 80 aa10.8□□□□□ -0.68
VPS28-215ENST00000531924 CD74P04233 296 aa10.8□□□□□ -0.68
VPS28-215ENST00000531924 P2RY1P47900 373 aa10.8□□□□□ -0.68
VPS28-215ENST00000531924 MRPS10P82664 201 aaKnown RBP10.8□□□□□ -0.68
VPS28-215ENST00000531924 SSBP1Q04837 148 aaKnown RBP10.8□□□□□ -0.68
VPS28-215ENST00000531924 Q8WTZ3 238 aa10.8□□□□□ -0.68
VPS28-215ENST00000531924 TMEM222Q9H0R3 208 aa10.8□□□□□ -0.68
VPS28-215ENST00000531924 DEFB4AO15263 64 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 OR5AC1P0C628 307 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 DHODHQ02127 395 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 MLANAQ16655 118 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 TIGITQ495A1 244 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 TMEM41BQ5BJD5 291 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 PVRIGQ6DKI7 326 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 FAM24BQ8N5W8 94 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 RBPMSQ93062 196 aaKnown RBP10.79□□□□□ -0.68
VPS28-215ENST00000531924 FNDC4Q9H6D8 234 aaPredicted RBP10.79□□□□□ -0.68
VPS28-215ENST00000531924 NAA60Q9H7X0 242 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 CACFD1Q9UGQ2 172 aa10.79□□□□□ -0.68
VPS28-215ENST00000531924 A0A0G2JRQ6 117 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 HELTA6NFD8 242 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 CDS2O95674 445 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 ZNF688P0C7X2 276 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 SLC25A4P12235 298 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 CRYBB3P26998 211 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 SURF2Q15527 256 aaPredicted RBP10.78□□□□□ -0.68
VPS28-215ENST00000531924 TMEM268Q5VZI3 342 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 LGALS9CQ6DKI2 356 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 ETFRF1Q6IPR1 90 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 FAAP20Q6NZ36 180 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 MORN3Q6PF18 240 aaPredicted RBP10.78□□□□□ -0.68
VPS28-215ENST00000531924 Q6ZRM9 215 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 GPR141Q7Z602 305 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 NOXA1Q86UR1 476 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 OR1S2Q8NGQ3 325 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 OR52E5Q8NH55 327 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 C2CD4CQ8TF44 421 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 MRPL36Q9P0J6 103 aaKnown RBP10.78□□□□□ -0.68
VPS28-215ENST00000531924 CACNG5Q9UF02 275 aa10.78□□□□□ -0.68
VPS28-215ENST00000531924 K7EQG2 157 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 AKAIN1P0CW23 69 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 SPP1P10451 314 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 OR10J1P30954 320 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 RND2P52198 227 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 AP2S1P53680 142 aaPredicted RBP10.77□□□□□ -0.69
VPS28-215ENST00000531924 DHRS2Q13268 280 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 IL18Q14116 193 aa10.77□□□□□ -0.69
VPS28-215ENST00000531924 SELENOHQ8IZQ5 122 aaKnown RBP10.77□□□□□ -0.69
VPS28-215ENST00000531924 RPP25LQ8N5L8 163 aaKnown RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms