RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ACP7Q6ZNF0 438 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 TCF23Q7RTU1 214 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 FAM19A3Q7Z5A8 133 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 PRNTQ86SH4 94 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 SGPP2Q8IWX5 399 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 TMEM61Q8N0U2 210 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 LYG1Q8N1E2 194 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 ZNF525Q8N782 197 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 MAGOHBQ96A72 148 aaKnown RBP3.38□□□□□ -1.87
CD44-220ENST00000525688 NARS2Q96I59 477 aaKnown RBP3.38□□□□□ -1.87
CD44-220ENST00000525688 TMEM101Q96IK0 257 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 KCNS1Q96KK3 526 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 OR2M2Q96R28 347 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 ZNF649Q9BS31 505 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 DEFB126Q9BYW3 111 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 POLR2J2Q9GZM3 115 aaKnown RBP3.38□□□□□ -1.87
CD44-220ENST00000525688 POLR2J3Q9H1A7 115 aaKnown RBP3.38□□□□□ -1.87
CD44-220ENST00000525688 VCXQ9H320 206 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 GPR84Q9NQS5 396 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 ZNF331Q9NQX6 463 aaPredicted RBP3.38□□□□□ -1.87
CD44-220ENST00000525688 SLC23A2Q9UGH3 650 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 LINC00527Q9UJ94 153 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 FIS1Q9Y3D6 152 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 ZNF106Q9H2Y7 1883 aaKnown RBP3.38□□□□□ -1.87
CD44-220ENST00000525688 PLXNB3Q9ULL4 1909 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 PTPRBP23467 1997 aa3.38□□□□□ -1.87
CD44-220ENST00000525688 COL27A1Q8IZC6 1860 aaPredicted RBP3.37□□□□□ -1.87
CD44-220ENST00000525688 ACACAQ13085 2346 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 IGLV3-16A0A075B6K0 115 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 A0A087WUU8 490 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 TRAV8-1A0A0A6YYK1 113 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 A0A1B0GVG6 124 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 CIB4A0PJX0 185 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 OR4C45A6NMZ5 311 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 CD300LBA8K4G0 201 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 A8MT66 165 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 CCL22O00626 93 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 TP53I11O14683 189 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 SRSF10O75494 262 aaKnown RBP3.37□□□□□ -1.87
CD44-220ENST00000525688 SERF1AO75920 110 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 P0C879 139 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 CHTF8P0CG12 524 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 IL1RNP18510 177 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 COX7A1P24310 79 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 NPY1RP25929 384 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 RAP1AP62834 184 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 PSG9Q00887 426 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 EGFEM1PQ0D2K5 195 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 PLCXD2Q0VAA5 305 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 KIAA0040Q15053 153 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 GUCA2BQ16661 112 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 ABCA11PQ4W5N1 156 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 LRRC10Q5BKY1 277 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.37□□□□□ -1.87
CD44-220ENST00000525688 HES3Q5TGS1 186 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 NXNL2Q5VZ03 156 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 ARL9Q6T311 187 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 SHISA6Q6ZSJ9 500 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 EXOC3-AS1Q8N2X6 119 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 TMEM75Q8N9X5 138 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 PATE1Q8WXA2 126 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 DCUN1D4Q92564 292 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 FRZBQ92765 325 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 IP6K3Q96PC2 410 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 SLC25A2Q9BXI2 301 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 Q9H3A6 140 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 POPDC3Q9HBV1 291 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 MED11Q9P086 117 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 ANAPC10Q9UM13 185 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 ZFYVE26Q68DK2 2539 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 IGSF10Q6WRI0 2623 aa3.37□□□□□ -1.87
CD44-220ENST00000525688 IGKV3D-20A0A0C4DH25 116 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 A0A1W2PNU3 283 aaPredicted RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 OR51F1A6NGY5 319 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 PEX7O00628 323 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 PHOX2AO14813 284 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 FABP3P05413 133 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 RPS4Y1P22090 263 aaKnown RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 HERVK_113P61574 105 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 RPL23P62829 140 aaKnown RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 GRB2P62993 217 aaKnown RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 SELENOWP63302 87 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 CRADDP78560 199 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 RELAQ04206 551 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 RHEBQ15382 184 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 TAF9Q16594 264 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 ZNF239Q16600 458 aaKnown RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 PRR30Q53SZ7 412 aaPredicted RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 UBE2NLQ5JXB2 153 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 DNLZQ5SXM8 178 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 C12orf45Q8N5I9 185 aaPredicted RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 DRAM1Q8N682 238 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 ZNF433Q8N7K0 673 aaPredicted RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 NAT14Q8WUY8 206 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 PPP3R2Q96LZ3 170 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 ANAPC13Q9BS18 74 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 CDC42EP4Q9H3Q1 356 aaKnown RBP3.36□□□□□ -1.87
CD44-220ENST00000525688 SLC25A22Q9H936 323 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 RPS10P5Q9NQ39 176 aa3.36□□□□□ -1.87
CD44-220ENST00000525688 RPS6KB2Q9UBS0 482 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms