RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	TMEM14B	Q9NUH8	114 aa		5.81	□□□□□ -1.48
NR1I3-231	ENST00000512340	PEMT	Q9UBM1	199 aa		5.81	□□□□□ -1.48
NR1I3-231	ENST00000512340	PEF1	Q9UBV8	284 aa	Known RBP	5.81	□□□□□ -1.48
NR1I3-231	ENST00000512340	SHPK	Q9UHJ6	478 aa		5.81	□□□□□ -1.48
NR1I3-231	ENST00000512340	TMEM56-RWDD3	S4R434	201 aa		5.81	□□□□□ -1.48
NR1I3-231	ENST00000512340	FAM240B	A0A1B0GVZ2	78 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	TEX22	C9J3V5	150 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	TMEM238	C9JI98	176 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	UBE2C	O00762	179 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	SOX15	O60248	233 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	IGHV3-11	P01762	117 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	RLN2	P04090	185 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	CCR6	P51684	374 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	ATP5I	P56385	69 aa	Predicted RBP	5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	EXOSC2	Q13868	293 aa	Known RBP	5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	FAM106A	Q4KMX7	169 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	C10orf55	Q5SWW7	151 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	ZNF343	Q6P1L6	599 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	TEX261	Q6UWH6	196 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	SELENOH	Q8IZQ5	122 aa	Known RBP	5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	LINC00482	Q8N8I6	264 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	NUDT10	Q8NFP7	164 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	OR2D3	Q8NGH3	330 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	OR1P1	Q8NH06	330 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	OR52E5	Q8NH55	327 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	OR1S1	Q8NH92	325 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	VN1R17P	Q8TDU5	208 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	GLYATL2	Q8WU03	294 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	RBMXL1	Q96E39	390 aa	Known RBP	5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	HEYL	Q9NQ87	328 aa	Predicted RBP	5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	NDUFA4L2	Q9NRX3	87 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	NSG2	Q9Y328	171 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	TMED3	Q9Y3Q3	217 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	F11R	Q9Y624	299 aa	Known RBP	5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340		U3KQ87	197 aa		5.8	□□□□□ -1.48
NR1I3-231	ENST00000512340	TRBV9	A0A0B4J1U6	114 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	TRAV3	A0A0B4J244	114 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340		A0A1B0GU03	582 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	RPS10-NUDT3	A0A1W2PQS6	291 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	IGLC7	A0M8Q6	106 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	CEBPZOS	A8MTT3	80 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	SEC14L6	B5MCN3	397 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	OVOL1	O14753	267 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	GGCT	O75223	188 aa	Known RBP	5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	OR2J3	O76001	311 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	SFT2D2	O95562	160 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	HLA-A	P01891	365 aa	Known RBP	5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	SLC25A6	P12236	298 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	AREG	P15514	252 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	FHL3	Q13643	280 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	TMEM187	Q14656	261 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	MRGPRG-AS1	Q2M3A8	158 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	DEFB136	Q30KP8	78 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	ASPHD1	Q5U4P2	390 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	ETFRF1	Q6IPR1	90 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	SPSB3	Q6PJ21	355 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	SLC16A13	Q7RTY0	426 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	C9orf62	Q8N4C0	152 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	CASTOR1	Q8WTX7	329 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	NARS2	Q96I59	477 aa	Known RBP	5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	CIB3	Q96Q77	187 aa	Predicted RBP	5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	GNB4	Q9HAV0	340 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	UBQLN2	Q9UHD9	624 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	TRRAP	Q9Y4A5	3859 aa		5.79	□□□□□ -1.48
NR1I3-231	ENST00000512340	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	INS-IGF2	F8WCM5	200 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	ST8SIA3	O43173	380 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	DLEU1	O43261	78 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	SAP30	O75446	220 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	IGKV1-39	P01597	117 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	IGKV1-5	P01602	117 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	IGKV1D-39	P04432	117 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	REG1A	P05451	166 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	ANXA7	P20073	488 aa	Known RBP	5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	HOXD3	P31249	432 aa	Predicted RBP	5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	ARL3	P36405	182 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	NPBWR1	P48145	328 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	CDC34	P49427	236 aa	Predicted RBP	5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	MFAP4	P55083	255 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	RBX1	P62877	108 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	SSBP2	P81877	361 aa	Predicted RBP	5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	TNFRSF9	Q07011	255 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	KIAA0141	Q14154	515 aa	Predicted RBP	5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	GUCA2B	Q16661	112 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	PLET1	Q6UQ28	207 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	C1QL4	Q86Z23	238 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	OR2C3	Q8N628	320 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	LRTM2	Q8N967	370 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	MISP3	Q96FF7	219 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	FAM210B	Q96KR6	192 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	GGACT	Q9BVM4	153 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	TMPRSS5	Q9H3S3	457 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	GPN1	Q9HCN4	374 aa	Predicted RBP	5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	CACNG5	Q9UF02	275 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	RNF24	Q9Y225	148 aa		5.78	□□□□□ -1.48
NR1I3-231	ENST00000512340	SORL1	Q92673	2214 aa		5.77	□□□□□ -1.49
NR1I3-231	ENST00000512340	IGLV11-55	A0A075B6I3	123 aa		5.77	□□□□□ -1.49
NR1I3-231	ENST00000512340	IGHV4OR15-8	A0A075B7B6	117 aa		5.77	□□□□□ -1.49
NR1I3-231	ENST00000512340		A0A087WW49	117 aa		5.77	□□□□□ -1.49
NR1I3-231	ENST00000512340	FAM90A26	D6RGX4	464 aa		5.77	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms