RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 RPP30P78346 268 aaKnown RBP12.48□□□□□ -0.41
SF3A1-209ENST00000496189 SLC24A4Q8NFF2 622 aa12.48□□□□□ -0.41
SF3A1-209ENST00000496189 CIB3Q96Q77 187 aaPredicted RBP12.48□□□□□ -0.41
SF3A1-209ENST00000496189 TXN2Q99757 166 aa12.48□□□□□ -0.41
SF3A1-209ENST00000496189 TECRQ9NZ01 308 aaKnown RBP12.48□□□□□ -0.41
SF3A1-209ENST00000496189 SMAD5-AS1Q9Y6J3 95 aa12.48□□□□□ -0.41
SF3A1-209ENST00000496189 SNRPGP15A8MWD9 76 aa12.47□□□□□ -0.41
SF3A1-209ENST00000496189 WRBO00258 174 aa12.47□□□□□ -0.41
SF3A1-209ENST00000496189 GNG7O60262 68 aa12.47□□□□□ -0.41
SF3A1-209ENST00000496189 MT-CO2P00403 227 aa12.47□□□□□ -0.41
SF3A1-209ENST00000496189 IFNA10P01566 189 aa12.47□□□□□ -0.41
SF3A1-209ENST00000496189 NPBWR1P48145 328 aa12.47□□□□□ -0.41
SF3A1-209ENST00000496189 RELQ04864 619 aaPredicted RBP12.47□□□□□ -0.41
SF3A1-209ENST00000496189 IAH1Q2TAA2 248 aaPredicted RBP12.47□□□□□ -0.41
SF3A1-209ENST00000496189 C2orf83Q53S99 150 aa12.47□□□□□ -0.41
SF3A1-209ENST00000496189 GTSCR1Q86UQ5 136 aa12.47□□□□□ -0.41
SF3A1-209ENST00000496189 HAPLN4Q86UW8 402 aa12.47□□□□□ -0.41
SF3A1-209ENST00000496189 RPS10-NUDT3A0A1W2PQS6 291 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 C2orf70A6NJV1 201 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 A8MWP6 167 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 K7EIM0 57 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 SYNGR2O43760 224 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 FOLR2P14207 255 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 NPY1RP25929 384 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 NKX2-1P43699 371 aaPredicted RBP12.46□□□□□ -0.41
SF3A1-209ENST00000496189 BSXQ3C1V8 233 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 IL34Q6ZMJ4 242 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 RNASEH2CQ8TDP1 164 aaKnown RBP12.46□□□□□ -0.41
SF3A1-209ENST00000496189 MARC2Q969Z3 335 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 GSKIPQ9P0R6 139 aa12.46□□□□□ -0.41
SF3A1-209ENST00000496189 IGHV3-35A0A0C4DH35 117 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 C5orf51A6NDU8 294 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 FAM25EA8MYX2 175 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 I3L2K1 104 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 NDUFA4O00483 81 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 OPRK1P41145 380 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 ELLP55199 621 aaPredicted RBP12.45□□□□□ -0.42
SF3A1-209ENST00000496189 PVRIGQ6DKI7 326 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 ETFRF1Q6IPR1 90 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 GSG1LQ6UXU4 331 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 B9D2Q9BPU9 175 aa12.45□□□□□ -0.42
SF3A1-209ENST00000496189 MPTX1A8MV57 137 aa12.44□□□□□ -0.42
SF3A1-209ENST00000496189 CBLN1P23435 193 aa12.44□□□□□ -0.42
SF3A1-209ENST00000496189 FCGR2BP31994 310 aaPredicted RBP12.44□□□□□ -0.42
SF3A1-209ENST00000496189 RAB11AP62491 216 aa12.44□□□□□ -0.42
SF3A1-209ENST00000496189 ID3Q02535 119 aa12.44□□□□□ -0.42
SF3A1-209ENST00000496189 ZBTB8BQ8NAP8 495 aaPredicted RBP12.44□□□□□ -0.42
SF3A1-209ENST00000496189 OR10C1Q96KK4 312 aa12.44□□□□□ -0.42
SF3A1-209ENST00000496189 C20orf24Q9BUV8 137 aa12.44□□□□□ -0.42
SF3A1-209ENST00000496189 ZNF436Q9C0F3 470 aaPredicted RBP12.44□□□□□ -0.42
SF3A1-209ENST00000496189 MAGT1Q9H0U3 335 aa12.44□□□□□ -0.42
SF3A1-209ENST00000496189 DAZ1Q9NQZ3 744 aaKnown RBP12.44□□□□□ -0.42
SF3A1-209ENST00000496189 LSM4Q9Y4Z0 139 aaKnown RBP12.44□□□□□ -0.42
SF3A1-209ENST00000496189 PRKDCP78527 4128 aaKnown RBP12.44□□□□□ -0.42
SF3A1-209ENST00000496189 YIF1AO95070 293 aa12.43□□□□□ -0.42
SF3A1-209ENST00000496189 SCGB1D2O95969 90 aa12.43□□□□□ -0.42
SF3A1-209ENST00000496189 IFNA4P05014 189 aa12.43□□□□□ -0.42
SF3A1-209ENST00000496189 IAPPP10997 89 aa12.43□□□□□ -0.42
SF3A1-209ENST00000496189 OR4D5Q8NGN0 318 aa12.43□□□□□ -0.42
SF3A1-209ENST00000496189 TMEM190Q8WZ59 177 aa12.43□□□□□ -0.42
SF3A1-209ENST00000496189 MRPL27Q9P0M9 148 aaKnown RBP12.43□□□□□ -0.42
SF3A1-209ENST00000496189 CCSO14618 274 aa12.42□□□□□ -0.42
SF3A1-209ENST00000496189 SLC25A4P12235 298 aa12.42□□□□□ -0.42
SF3A1-209ENST00000496189 GUCA2BQ16661 112 aa12.42□□□□□ -0.42
SF3A1-209ENST00000496189 RGS21Q2M5E4 152 aa12.42□□□□□ -0.42
SF3A1-209ENST00000496189 CD300EQ496F6 205 aaPredicted RBP12.42□□□□□ -0.42
SF3A1-209ENST00000496189 RBPMS2Q6ZRY4 209 aaKnown RBP12.42□□□□□ -0.42
SF3A1-209ENST00000496189 C2orf50Q96LR7 162 aa12.42□□□□□ -0.42
SF3A1-209ENST00000496189 RAB40CQ96S21 281 aa12.42□□□□□ -0.42
SF3A1-209ENST00000496189 CHRDL1Q9BU40 450 aa12.42□□□□□ -0.42
SF3A1-209ENST00000496189 PAIP2BQ9ULR5 123 aaKnown RBP12.42□□□□□ -0.42
SF3A1-209ENST00000496189 SORL1Q92673 2214 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 TMEM213A2RRL7 107 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 SSNA1O43805 119 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 SSSCA1O60232 199 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 IGHV3-48P01763 117 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 CTSGP08311 255 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 BMI1P35226 326 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 POLR2GP62487 172 aaKnown RBP eCLIP12.41□□□□□ -0.42
SF3A1-209ENST00000496189 DEFB114Q30KQ6 69 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 TM4SF20Q53R12 229 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 UNQ9165/PRO28630Q6UXU0 137 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 GINS3Q9BRX5 216 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 STRAPQ9Y3F4 350 aaKnown RBP12.41□□□□□ -0.42
SF3A1-209ENST00000496189 TGP01266 2768 aa12.41□□□□□ -0.42
SF3A1-209ENST00000496189 TRAV30A0A087WSZ9 112 aa12.4□□□□□ -0.42
SF3A1-209ENST00000496189 C15orf62A8K5M9 175 aa12.4□□□□□ -0.42
SF3A1-209ENST00000496189 NHLRC4P0CG21 123 aaPredicted RBP12.4□□□□□ -0.42
SF3A1-209ENST00000496189 SPANXN5Q5MJ07 72 aa12.4□□□□□ -0.42
SF3A1-209ENST00000496189 LAMTOR1Q6IAA8 161 aa12.4□□□□□ -0.42
SF3A1-209ENST00000496189 SLC16A13Q7RTY0 426 aa12.4□□□□□ -0.42
SF3A1-209ENST00000496189 OR4X1Q8NH49 305 aa12.4□□□□□ -0.42
SF3A1-209ENST00000496189 CACNG8Q8WXS5 425 aa12.4□□□□□ -0.42
SF3A1-209ENST00000496189 SMIM8Q96KF7 97 aa12.4□□□□□ -0.42
SF3A1-209ENST00000496189 F8W735 103 aaPredicted RBP12.39□□□□□ -0.43
SF3A1-209ENST00000496189 K7EMT4 169 aa12.39□□□□□ -0.43
SF3A1-209ENST00000496189 L7N2F9 121 aa12.39□□□□□ -0.43
SF3A1-209ENST00000496189 PVALBP20472 110 aaPredicted RBP12.39□□□□□ -0.43
SF3A1-209ENST00000496189 ADMP35318 185 aa12.39□□□□□ -0.43
SF3A1-209ENST00000496189 GPX4P36969 197 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms