RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 AP5S1Q9NUS5 200 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 LTBP2Q14767 1821 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 WNK1Q9H4A3 2382 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 DENND4AQ7Z401 1863 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 C17orf100A8MU93 164 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 C3orf79P0CE67 100 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 PCSK4Q6UW60 755 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 KBTBD11-OT1A0A1B0GTJ5 212 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 APOBEC3AP31941 199 aaPredicted RBP13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 AMMECR1LQ6DCA0 310 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 FOXL2NBQ6ZUU3 175 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 NUDT10Q8NFP7 164 aa13.54□□□□□ -0.24
CCDC88B-209ENST00000494080 TBR1Q16650 682 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 ZNF841Q6ZN19 808 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 A0A1B0GV72 72 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 B9A039 149 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 CA7P43166 264 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 KLRB1Q12918 225 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 SPACA3Q8IXA5 215 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 PNKDQ8N490 385 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 OR10AG1Q8NH19 301 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 OBSL1O75147 1896 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 KIAA1671Q9BY89 1806 aa13.53□□□□□ -0.24
CCDC88B-209ENST00000494080 CYYR1Q96J86 154 aa13.52□□□□□ -0.24
CCDC88B-209ENST00000494080 RALYQ9UKM9 306 aaKnown RBP13.52□□□□□ -0.24
CCDC88B-209ENST00000494080 RAXQ9Y2V3 346 aa13.52□□□□□ -0.24
CCDC88B-209ENST00000494080 IZUMO1RA6ND01 250 aa13.52□□□□□ -0.24
CCDC88B-209ENST00000494080 HYPMO75409 117 aa13.52□□□□□ -0.24
CCDC88B-209ENST00000494080 GPX1P07203 203 aa13.52□□□□□ -0.25
CCDC88B-209ENST00000494080 PEAR1Q5VY43 1037 aaPredicted RBP13.52□□□□□ -0.25
CCDC88B-209ENST00000494080 CCDC144NLQ6NUI1 221 aa13.52□□□□□ -0.25
CCDC88B-209ENST00000494080 MRPL52Q86TS9 123 aaKnown RBP13.52□□□□□ -0.25
CCDC88B-209ENST00000494080 NPIPB3Q92617 1050 aa13.52□□□□□ -0.25
CCDC88B-209ENST00000494080 PLSCR4Q9NRQ2 329 aa13.52□□□□□ -0.25
CCDC88B-209ENST00000494080 TM4SF20Q53R12 229 aa13.52□□□□□ -0.25
CCDC88B-209ENST00000494080 TMEM14EPQ6UXP3 125 aa13.52□□□□□ -0.25
CCDC88B-209ENST00000494080 HIGD1CA8MV81 97 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 LYNX1G3V0Z9 82 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 LYNX1P0DP58 116 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 Q1RN00 199 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 OR10J3Q5JRS4 329 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 FNDC4Q9H6D8 234 aaPredicted RBP13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 H3BUT2 72 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 RBFOX2O43251 390 aaKnown RBP eCLIP13.51□□□□□ -0.256e-7■■■■■ 49.7
CCDC88B-209ENST00000494080 RSPO1Q2MKA7 263 aaPredicted RBP13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 SCGB1D4Q6XE38 83 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 ORAOV1Q8WV07 137 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 SRSF12Q8WXF0 261 aaKnown RBP13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 TMEM186Q96B77 213 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 OTOGLQ3ZCN5 2332 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 J3KRW8 73 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 TSPOP30536 169 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 SELENOTP62341 195 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 ZNF726P1Q15940 193 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 METRNQ9UJH8 293 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 PRR14LQ5THK1 2151 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 A1L4Q6 167 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 DLL1O00548 723 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 GRAMD2BQ96HH9 432 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 OSTCQ9NRP0 149 aa13.51□□□□□ -0.25
CCDC88B-209ENST00000494080 GOSR1O95249 250 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 ORM1P02763 201 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 SONP18583 2426 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 PAX9P55771 341 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 MPV17L2Q567V2 206 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 CRIM1Q9NZV1 1036 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 GPR183P32249 361 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 EFNB3Q15768 340 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 PRR31Q5SQ13 230 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 SAMD13Q5VXD3 122 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 SNRNP40Q96DI7 357 aaKnown RBP13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 CLEC7AQ9BXN2 247 aa13.5□□□□□ -0.25
CCDC88B-209ENST00000494080 ZNF146Q15072 292 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 MORN2Q502X0 79 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 TPTE2P1Q5T6R2 138 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 Q6ZWC4 215 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 UFC1Q9Y3C8 167 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 ALPK3Q96L96 1907 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 C19orf24Q9BVV8 132 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 ITGB1BP1O14713 200 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 STAG3L2P0CL84 134 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 STAG3L3P0CL85 134 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 GAGE1Q13065 139 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 SPCS1Q9Y6A9 102 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 IGHV3-35A0A0C4DH35 117 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 COL4A3Q01955 1670 aa13.49□□□□□ -0.25
CCDC88B-209ENST00000494080 SRSF9Q13242 221 aaKnown RBP eCLIP13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 MRPL20Q9BYC9 149 aaKnown RBP13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 FBXL7Q9UJT9 491 aa13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 NCOA6Q14686 2063 aaPredicted RBP13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 SAA2-SAA4A0A096LPE2 208 aa13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 C7orf71A4D174 169 aa13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 M0QZ24 198 aa13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 SAA2P0DJI9 122 aaPredicted RBP13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 CKS2P33552 79 aa13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 C20orf204Q6ZNR8 217 aa13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 HIGD1AQ9Y241 93 aa13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 IGHV1-46P01743 117 aa13.48□□□□□ -0.25
CCDC88B-209ENST00000494080 MALRD1Q5VYJ5 2156 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms