RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 SULT1A4P0DMN0 295 aa11.3□□□□□ -0.6
USP39-217ENST00000491659 SRPXP78539 464 aa11.3□□□□□ -0.6
USP39-217ENST00000491659 TMEM187Q14656 261 aa11.3□□□□□ -0.6
USP39-217ENST00000491659 ZNF79Q15937 498 aa11.3□□□□□ -0.6
USP39-217ENST00000491659 SPANXN2Q5MJ10 180 aa11.3□□□□□ -0.6
USP39-217ENST00000491659 PVRIGQ6DKI7 326 aa11.3□□□□□ -0.6
USP39-217ENST00000491659 LINC00322Q6ZN03 302 aaPredicted RBP11.3□□□□□ -0.6
USP39-217ENST00000491659 GINS3Q9BRX5 216 aa11.3□□□□□ -0.6
USP39-217ENST00000491659 HEYLQ9NQ87 328 aaPredicted RBP11.3□□□□□ -0.6
USP39-217ENST00000491659 PIGBOS1A0A0B4J2F0 54 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 IGHV7-4-1A0A0J9YVY3 117 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 RBMY1BA6NDE4 496 aaKnown RBP11.29□□□□□ -0.6
USP39-217ENST00000491659 RBMY1EA6NEQ0 496 aaKnown RBP11.29□□□□□ -0.6
USP39-217ENST00000491659 RBMY1DP0C7P1 496 aaKnown RBP11.29□□□□□ -0.6
USP39-217ENST00000491659 BMI1P35226 326 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 HTR2BP41595 481 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 BSXQ3C1V8 233 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 ZNF600Q6ZNG1 722 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 TMED4Q7Z7H5 227 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 CCDC190Q86UF4 302 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 TMEM116Q8NCL8 245 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 DEDD2Q8WXF8 326 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 OR10C1Q96KK4 312 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 PRR13Q9NZ81 148 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 SMPXQ9UHP9 88 aa11.29□□□□□ -0.6
USP39-217ENST00000491659 TRAV14DV4A0A0A6YYC5 116 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 A0A0B4J2A0 478 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 RPS10-NUDT3A0A1W2PQS6 291 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 OR4C46A6NHA9 309 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 NXPH3O95157 252 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 LGI3Q8N145 548 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 SLC24A4Q8NFF2 622 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 ZNF414Q96IQ9 312 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 RHPN1-AS1Q9BWJ2 59 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 GGTLC1Q9BX51 225 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 HIPK2Q9H2X6 1198 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 RETNQ9HD89 108 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 SHPKQ9UHJ6 478 aa11.28□□□□□ -0.6
USP39-217ENST00000491659 LOC102724200A0A096LPH7 203 aaPredicted RBP11.27□□□□□ -0.61
USP39-217ENST00000491659 IGHV3-49A0A0A0MS15 119 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 CHEK1O14757 476 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 CLN5O75503 358 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 INPP1P49441 399 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 CCR6P51684 374 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 SUPT4H1P63272 117 aaKnown RBP11.27□□□□□ -0.61
USP39-217ENST00000491659 SMCO1Q147U7 214 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 C2orf83Q53S99 150 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 TOMM20LQ6UXN7 152 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 OR4X1Q8NH49 305 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 FNDC4Q9H6D8 234 aaPredicted RBP11.27□□□□□ -0.61
USP39-217ENST00000491659 UBQLN2Q9UHD9 624 aa11.27□□□□□ -0.61
USP39-217ENST00000491659 PUS1Q9Y606 427 aaKnown RBP eCLIP11.27□□□□□ -0.61
USP39-217ENST00000491659 TMEM50AO95807 157 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 LYL1P12980 280 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 TMEM128Q5BJH2 165 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 NMSQ5H8A3 153 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 TRIQKQ629K1 86 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 LYZL2Q7Z4W2 148 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 NOXA1Q86UR1 476 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 RNASEH2CQ8TDP1 164 aaKnown RBP11.26□□□□□ -0.61
USP39-217ENST00000491659 RNF2Q99496 336 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 FAM110AQ9BQ89 295 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 SLC25A21Q9BQT8 299 aaPredicted RBP11.26□□□□□ -0.61
USP39-217ENST00000491659 SRRQ9GZT4 340 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 ZFAND3Q9H8U3 227 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 EDA2RQ9HAV5 297 aa11.26□□□□□ -0.61
USP39-217ENST00000491659 IGHV3OR16-13A0A075B7E8 117 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 TRAV30A0A087WSZ9 112 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 IGHV3-74A0A0B4J1X5 117 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 DUXBA0A1W2PPF3 345 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 CD5P06127 495 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 SLC25A4P12235 298 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 VAMP1P23763 118 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 NPY1RP25929 384 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 TNFRSF9Q07011 255 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 OR1S1Q8NH92 325 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 TMEM231Q9H6L2 316 aa11.25□□□□□ -0.61
USP39-217ENST00000491659 A0A1B0GU03 582 aa11.24□□□□□ -0.61
USP39-217ENST00000491659 ODF3L2Q3SX64 289 aa11.24□□□□□ -0.61
USP39-217ENST00000491659 CASC10Q5T4H9 136 aa11.24□□□□□ -0.61
USP39-217ENST00000491659 ETFRF1Q6IPR1 90 aa11.24□□□□□ -0.61
USP39-217ENST00000491659 DTD1Q8TEA8 209 aa11.24□□□□□ -0.61
USP39-217ENST00000491659 ST8SIA2Q92186 375 aa11.24□□□□□ -0.61
USP39-217ENST00000491659 MRPL36Q9P0J6 103 aaKnown RBP11.24□□□□□ -0.61
USP39-217ENST00000491659 HSPB7Q9UBY9 170 aa11.24□□□□□ -0.61
USP39-217ENST00000491659 IGKV3-7A0A075B6H7 116 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 IFNA10P01566 189 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 TFPI2P48307 235 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 RND2P52198 227 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 APOC4P55056 127 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 PAFAH1B2P68402 229 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 RBMS2Q15434 407 aaKnown RBP11.23□□□□□ -0.61
USP39-217ENST00000491659 MLANAQ16655 118 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 TCF24Q7RTU0 167 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 CENPSQ8N2Z9 138 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 OR1S2Q8NGQ3 325 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 NARS2Q96I59 477 aaKnown RBP11.23□□□□□ -0.61
USP39-217ENST00000491659 METTL26Q96S19 204 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 RBKSQ9H477 322 aa11.23□□□□□ -0.61
USP39-217ENST00000491659 VSIRQ9H7M9 311 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms