RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 REEP5Q00765 189 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 SRSF6Q13247 344 aaKnown RBP0.69□□□□□ -2.3
PTPN4-212ENST00000488896 ZNF345Q14585 488 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 RNASE10Q5GAN6 216 aaKnown RBP0.69□□□□□ -2.3
PTPN4-212ENST00000488896 DYNAPQ8N1N2 210 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 OR52R1Q8NGF1 315 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 OR8D4Q8NGM9 314 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 CT55Q8WUE5 264 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 H1FXQ92522 213 aaKnown RBP0.69□□□□□ -2.3
PTPN4-212ENST00000488896 BORCS7Q96B45 105 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 TOMM6Q96B49 74 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 SCGB3A1Q96QR1 104 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 SLC50A1Q9BRV3 221 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 ENY2Q9NPA8 101 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 ACER3Q9NUN7 267 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 GLTPQ9NZD2 209 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 MRPL27Q9P0M9 148 aaKnown RBP0.69□□□□□ -2.3
PTPN4-212ENST00000488896 CKLFQ9UBR5 152 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 TP73-AS1Q9UF72 201 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 CYSLTR1Q9Y271 337 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 ERGIC3Q9Y282 383 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 SNURFQ9Y675 71 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 TMEM56-RWDD3S4R434 201 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 DCCP43146 1447 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 EIF4G1Q04637 1599 aaKnown RBP0.69□□□□□ -2.3
PTPN4-212ENST00000488896 TECTAO75443 2155 aa0.69□□□□□ -2.3
PTPN4-212ENST00000488896 EXPH5Q8NEV8 1989 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 IGKV1D-42A0A075B6H8 117 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 hADV38S2A0JD32 116 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 SULT1B1O43704 296 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 ZFYVE9O95405 1425 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 C1QAP02745 245 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 TTRP02766 147 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 RBP1P09455 135 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 FKBP2P26885 142 aaKnown RBP0.68□□□□□ -2.3
PTPN4-212ENST00000488896 ZNF93P35789 620 aaPredicted RBP0.68□□□□□ -2.3
PTPN4-212ENST00000488896 RANP62826 216 aaKnown RBP0.68□□□□□ -2.3
PTPN4-212ENST00000488896 H3F3AP84243 136 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 EDDM3AQ14507 147 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 RHEBQ15382 184 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 Q6ZQT0 140 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 MIR17HGQ75NE6 70 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 TRAPPC6BQ86SZ2 158 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 OR6V1Q8N148 313 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 C1orf158Q8N1D5 194 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 HIST3H2BBQ8N257 126 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 BTF3L4Q96K17 158 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 C9orf16Q9BUW7 83 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 REG4Q9BYZ8 158 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 YIPF3Q9GZM5 350 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 C6orf62Q9GZU0 229 aaPredicted RBP0.68□□□□□ -2.3
PTPN4-212ENST00000488896 DCSTAMPQ9H295 470 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 NMNAT1Q9HAN9 279 aaPredicted RBP0.68□□□□□ -2.3
PTPN4-212ENST00000488896 MED9Q9NWA0 146 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 OR5AC2Q9NZP5 309 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 OPTCQ9UBM4 332 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 ARL2BPQ9Y2Y0 163 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 KIF13BQ9NQT8 1826 aa0.68□□□□□ -2.3
PTPN4-212ENST00000488896 ALPK2Q86TB3 2170 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 GLI3P10071 1580 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 WRNQ14191 1432 aaPredicted RBP eCLIP0.67□□□□□ -2.3
PTPN4-212ENST00000488896 TRAV1-1A0A0B4J248 108 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 FADS1O60427 444 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 SERPINA1P01009 418 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 IGKV1-5P01602 117 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 SERPINE1P05121 402 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 PPIBP23284 216 aaKnown RBP0.67□□□□□ -2.3
PTPN4-212ENST00000488896 ERP29P30040 261 aaKnown RBP0.67□□□□□ -2.3
PTPN4-212ENST00000488896 SERPINB9P50453 376 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 ZNF80P51504 273 aaPredicted RBP0.67□□□□□ -2.3
PTPN4-212ENST00000488896 EIF5AP63241 154 aaKnown RBP0.67□□□□□ -2.3
PTPN4-212ENST00000488896 PLCXD2Q0VAA5 305 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 ZNF846Q147U1 533 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 RGS21Q2M5E4 152 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 SYPL2Q5VXT5 272 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 PHF13Q86YI8 300 aaPredicted RBP0.67□□□□□ -2.3
PTPN4-212ENST00000488896 GDPD1Q8N9F7 314 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 OR51A2Q8NGJ7 313 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 OR13C4Q8NGS5 318 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 LHFPL6Q9Y693 200 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 MTUS2Q5JR59 1369 aa0.67□□□□□ -2.3
PTPN4-212ENST00000488896 MUC5ACP98088 5654 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 SETD5Q9C0A6 1442 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 STRCQ7RTU9 1775 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 A0A087X0T9 212 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 FUOMA2VDF0 154 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 BUB1B-PAK6H3BSN5 160 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 HMGB3O15347 200 aaKnown RBP0.66□□□□□ -2.3
PTPN4-212ENST00000488896 CYB5BO43169 146 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 OR7C1O76099 320 aaPredicted RBP0.66□□□□□ -2.3
PTPN4-212ENST00000488896 TCL1BO95988 128 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 SHBGP04278 402 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 C8GP07360 202 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 ASAH2BP0C7U1 165 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 SMIM10L2AP0DMW4 78 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 SMIM10L2BP0DMW5 78 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 IL9P15248 144 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 BRS3P32247 399 aa0.66□□□□□ -2.3
PTPN4-212ENST00000488896 SRP14P37108 136 aaKnown RBP0.66□□□□□ -2.3
PTPN4-212ENST00000488896 RAB4BP61018 213 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms