RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ZNF430Q9H8G1 570 aaPredicted RBP14.51□□□□□ -0.09
VIM-206ENST00000487938 TPPP2P59282 170 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 TMEM167AQ8TBQ9 72 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 TBX15Q96SF7 602 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 TMEM106BQ9NUM4 274 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 MRPL36Q9P0J6 103 aaKnown RBP14.5□□□□□ -0.09
VIM-206ENST00000487938 PKDREJQ9NTG1 2253 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 PLXNB1O43157 2135 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 PPOXP50336 477 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 IBA57Q5T440 356 aaKnown RBP14.5□□□□□ -0.09
VIM-206ENST00000487938 ABHD17AQ96GS6 310 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 OSTCQ9NRP0 149 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 TPSG1Q9NRR2 321 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 CTSZQ9UBR2 303 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 NAT8BQ9UHF3 227 aa14.5□□□□□ -0.09
VIM-206ENST00000487938 IGHV3-72A0A0B4J1Y9 119 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 A0A1W2PN81 502 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 COX7A2P2O60397 106 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 CA1P00915 261 aaPredicted RBP14.49□□□□□ -0.09
VIM-206ENST00000487938 IGLV2-23P01705 113 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 CX3CL1P78423 397 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 LRRC10Q5BKY1 277 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 PATE2Q6UY27 113 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 LHFPL4Q7Z7J7 247 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 DMRTC2Q8IXT2 367 aaPredicted RBP14.49□□□□□ -0.09
VIM-206ENST00000487938 BEND2Q8NDZ0 799 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 IGF2BP2-AS1Q96M15 143 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 HSPB9Q9BQS6 159 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 GNB1LQ9BYB4 327 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 ZNF355PQ9NSJ1 428 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 ENSAO43768 121 aaKnown RBP14.49□□□□□ -0.09
VIM-206ENST00000487938 SLC25A17O43808 307 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 MRPL54Q6P161 138 aaKnown RBP14.49□□□□□ -0.09
VIM-206ENST00000487938 MRPL32Q9BYC8 188 aaKnown RBP14.49□□□□□ -0.09
VIM-206ENST00000487938 CUL9Q8IWT3 2517 aa14.49□□□□□ -0.09
VIM-206ENST00000487938 PLAUP00749 431 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 DLX1P56177 255 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 TAS2R60P59551 318 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 PAFAH1B2P68402 229 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 PRB3Q04118 309 aaPredicted RBP14.48□□□□□ -0.09
VIM-206ENST00000487938 TDRG1Q3Y452 100 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 C1orf194Q5T5A4 169 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 C10orf113Q5VZT2 155 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 RUSC1-AS1Q66K80 236 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 PDPNQ86YL7 162 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 FAM168AQ92567 244 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 TMEM186Q96B77 213 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 C2orf88Q9BSF0 95 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 CBLN4Q9NTU7 201 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 NAV3Q8IVL0 2385 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 IGKV1D-37A0A075B6S9 117 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 TRAV34A0A0B4J273 112 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 ISLRO14498 428 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 TNFRSF13BO14836 293 aaPredicted RBP14.48□□□□□ -0.09
VIM-206ENST00000487938 APELAP0DMC3 54 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 ST6GALNAC6Q969X2 333 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 PAXXQ9BUH6 204 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 SSBP3Q9BWW4 388 aaPredicted RBP14.48□□□□□ -0.09
VIM-206ENST00000487938 GNB4Q9HAV0 340 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 WASHC3Q9Y3C0 194 aa14.48□□□□□ -0.09
VIM-206ENST00000487938 EREGO14944 169 aa14.47□□□□□ -0.09
VIM-206ENST00000487938 CDKN1AP38936 164 aa14.47□□□□□ -0.09
VIM-206ENST00000487938 TDGF1P3P51864 188 aa14.47□□□□□ -0.09
VIM-206ENST00000487938 TMEM136Q6ZRR5 245 aa14.47□□□□□ -0.09
VIM-206ENST00000487938 TGIF2LXQ8IUE1 241 aa14.47□□□□□ -0.09
VIM-206ENST00000487938 VSTM2AQ8TAG5 236 aa14.47□□□□□ -0.09
VIM-206ENST00000487938 FAM103A1Q9BTL3 118 aaKnown RBP14.47□□□□□ -0.09
VIM-206ENST00000487938 PIEZO2Q9H5I5 2752 aa14.47□□□□□ -0.09
VIM-206ENST00000487938 LOXP28300 417 aaPredicted RBP14.46□□□□□ -0.09
VIM-206ENST00000487938 Q0VG73 95 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 HCP5Q6MZN7 132 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 TOMM20LQ6UXN7 152 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 GFRALQ6UXV0 394 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 RNASE6Q93091 150 aaKnown RBP14.46□□□□□ -0.09
VIM-206ENST00000487938 SAMD10Q9BYL1 202 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 AMMECR1Q9Y4X0 333 aaPredicted RBP14.46□□□□□ -0.09
VIM-206ENST00000487938 ANKRD11Q6UB99 2663 aaPredicted RBP14.46□□□□□ -0.09
VIM-206ENST00000487938 GVINP1Q7Z2Y8 2422 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 TRBV9A0A0B4J1U6 114 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 A0A1W2PPI3 338 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 TCRBV4S1A1TA0A5B7 111 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 ESDP10768 282 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 SUB1P53999 127 aaKnown RBP eCLIP14.46□□□□□ -0.092e-9■■■□□ 17.6
VIM-206ENST00000487938 RANP62826 216 aaKnown RBP14.46□□□□□ -0.09
VIM-206ENST00000487938 C19orf35Q6ZS72 473 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 OR4A5Q8NH83 315 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 RNF2Q99496 336 aa14.46□□□□□ -0.09
VIM-206ENST00000487938 INS-IGF2F8WCM5 200 aa14.45□□□□□ -0.1
VIM-206ENST00000487938 IGHV3-21A0A0B4J1V1 117 aa14.45□□□□□ -0.1
VIM-206ENST00000487938 DLX6P56179 175 aa14.45□□□□□ -0.1
VIM-206ENST00000487938 ZNF329Q86UD4 541 aa14.45□□□□□ -0.1
VIM-206ENST00000487938 LINC00311Q8N616 119 aa14.45□□□□□ -0.1
VIM-206ENST00000487938 DYNLRB1Q9NP97 96 aa14.45□□□□□ -0.1
VIM-206ENST00000487938 SMIM27A0A1W2PRY6 76 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 MOSP00540 346 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 ORM2P19652 201 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 MRGPRG-AS1Q2M3A8 158 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 WDR73Q6P4I2 378 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 LINC00305Q7Z4B0 112 aa14.44□□□□□ -0.1
VIM-206ENST00000487938 OR1L4Q8NGR5 311 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms