RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 OR10G7Q8NGN6 311 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 SSMEM1Q8WWF3 244 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 NARS2Q96I59 477 aaKnown RBP11.24□□□□□ -0.61
CUX1-209ENST00000487284 SLC35E1Q96K37 410 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 ZNF48Q96MX3 618 aaPredicted RBP11.24□□□□□ -0.61
CUX1-209ENST00000487284 TREM1Q9NP99 234 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 C1RLQ9NZP8 487 aa11.24□□□□□ -0.61
CUX1-209ENST00000487284 F11RQ9Y624 299 aaKnown RBP11.24□□□□□ -0.61
CUX1-209ENST00000487284 IGKV1OR2-108A0A075B7D4 117 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 A0A1B0GV50 99 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 MAP1LC3B2A6NCE7 125 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 SEC14L6B5MCN3 397 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 CORTO00230 105 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 CRYGCP07315 174 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 PRR20EP86478 221 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 PRR20CP86479 221 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 PRR20DP86480 221 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 PRR20BP86481 221 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 PRR20AP86496 221 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 FXYD3Q14802 87 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 MLANAQ16655 118 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 MIC13Q5XKP0 118 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 ZNF562Q6V9R5 426 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 Q8N9W7 124 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 SSX3Q99909 188 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 PBDC1Q9BVG4 233 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 ACTR3CQ9C0K3 210 aaPredicted RBP11.23□□□□□ -0.61
CUX1-209ENST00000487284 MAP1LC3BQ9GZQ8 125 aa11.23□□□□□ -0.61
CUX1-209ENST00000487284 NCBP2LA6PVI3 153 aaKnown RBP11.22□□□□□ -0.61
CUX1-209ENST00000487284 HLA-DRB1P01911 266 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 APELAP0DMC3 54 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 CX3CL1P78423 397 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 PEA15Q15121 130 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 C10orf91Q5T1B1 145 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 ETFRF1Q6IPR1 90 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 LCN15Q6UWW0 184 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 PIFOQ8TCI5 191 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 SLC25A22Q9H936 323 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 SLC45A2Q9UMX9 530 aa11.22□□□□□ -0.61
CUX1-209ENST00000487284 C9JQL5 133 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 CYB5BO43169 146 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 CTRB1P17538 263 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 ADCYAP1P18509 176 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 CTRB2Q6GPI1 263 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 FAM122CQ6P4D5 195 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 C19orf35Q6ZS72 473 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 CCDC28AQ8IWP9 274 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 STPG3Q8N7X2 389 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 THAP8Q8NA92 274 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 ABHD5Q8WTS1 349 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 ARPC1AQ92747 370 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 SMDT1Q9H4I9 107 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 SLC39A9Q9NUM3 307 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 DMRT1Q9Y5R6 373 aa11.21□□□□□ -0.61
CUX1-209ENST00000487284 FN1P02751 2386 aaKnown RBP11.21□□□□□ -0.62
CUX1-209ENST00000487284 TEP1Q99973 2627 aaKnown RBP11.21□□□□□ -0.62
CUX1-209ENST00000487284 RBFOX3A6NFN3 312 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 INAFM1C9JVW0 142 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 H3BUX3 64 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 TSPAN9O75954 239 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 LINC00869P0C866 280 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 OR10J1P30954 320 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 CDC34P49427 236 aaPredicted RBP11.2□□□□□ -0.62
CUX1-209ENST00000487284 B2MP61769 119 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 NDPQ00604 133 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 PMS2P11Q13670 270 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 GCSAMLQ5JQS6 135 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 OR2T6Q8NHC8 308 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 RAB24Q969Q5 203 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 MISP3Q96FF7 219 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 ACY3Q96HD9 319 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 EIF5A2Q9GZV4 153 aaKnown RBP11.2□□□□□ -0.62
CUX1-209ENST00000487284 CDC42EP3Q9UKI2 254 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 CARHSP1Q9Y2V2 147 aaKnown RBP11.2□□□□□ -0.62
CUX1-209ENST00000487284 IGHV4-59P01825 116 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 FGF8P55075 233 aaPredicted RBP11.2□□□□□ -0.62
CUX1-209ENST00000487284 LY6EQ16553 131 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 ZNF506Q5JVG8 444 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 ASPHD1Q5U4P2 390 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 OR1L6Q8NGR2 347 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 SEC11CQ9BY50 192 aa11.2□□□□□ -0.62
CUX1-209ENST00000487284 MRPL36Q9P0J6 103 aaKnown RBP11.2□□□□□ -0.62
CUX1-209ENST00000487284 CUBNO60494 3623 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 IGHV7-81A0A0B4J1V7 117 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 NPIPB5A8MRT5 1133 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 SFTA3P0C7M3 94 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 DEFA4P12838 97 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 RND2P52198 227 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 Q6YL49 198 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 TMEM219Q86XT9 240 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 SIGLECL1Q8N7X8 197 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 TMEM116Q8NCL8 245 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 NPIPB3Q92617 1050 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 RASL11BQ9BPW5 248 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 FAM103A1Q9BTL3 118 aaKnown RBP11.19□□□□□ -0.62
CUX1-209ENST00000487284 WNT10AQ9GZT5 417 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 PRDM13Q9H4Q3 707 aa11.19□□□□□ -0.62
CUX1-209ENST00000487284 IGKV1D-37A0A075B6S9 117 aa11.18□□□□□ -0.62
CUX1-209ENST00000487284 LOC102723971A0A1B0GUV8 181 aa11.18□□□□□ -0.62
CUX1-209ENST00000487284 F8W036 122 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms