RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-208ENST00000486404 MUC7Q8TAX7 377 aa9.67□□□□□ -0.86
CHMP3-208ENST00000486404 TMEM230Q96A57 120 aa9.67□□□□□ -0.86
CHMP3-208ENST00000486404 GALNT14Q96FL9 552 aa9.67□□□□□ -0.86
CHMP3-208ENST00000486404 PRR13Q9NZ81 148 aa9.67□□□□□ -0.86
CHMP3-208ENST00000486404 TMEM56-RWDD3S4R434 201 aa9.67□□□□□ -0.86
CHMP3-208ENST00000486404 IGHV7-4-1A0A0J9YVY3 117 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 OR4C46A6NHA9 309 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 TSPAN4O14817 238 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 TMEM187Q14656 261 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 ZNF79Q15937 498 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 TRIQKQ629K1 86 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 Q6ZRM9 215 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 LGI3Q8N145 548 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 SLC24A4Q8NFF2 622 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 GPR146Q96CH1 333 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 CITED4Q96RK1 184 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 HIPK2Q9H2X6 1198 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 RETNQ9HD89 108 aa9.66□□□□□ -0.86
CHMP3-208ENST00000486404 IGHV3-49A0A0A0MS15 119 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 A0A0B4J2A0 478 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 VAMP1P23763 118 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 SMCO1Q147U7 214 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 AARDQ4LEZ3 155 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 ZNF600Q6ZNG1 722 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 CCDC190Q86UF4 302 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 DEDD2Q8WXF8 326 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 FAM110AQ9BQ89 295 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 RHPN1-AS1Q9BWJ2 59 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 GGTLC1Q9BX51 225 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 UBQLN2Q9UHD9 624 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 SHPKQ9UHJ6 478 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 SMPXQ9UHP9 88 aa9.65□□□□□ -0.86
CHMP3-208ENST00000486404 LOC102724200A0A096LPH7 203 aaPredicted RBP9.64□□□□□ -0.87
CHMP3-208ENST00000486404 TRAV14DV4A0A0A6YYC5 116 aa9.64□□□□□ -0.87
CHMP3-208ENST00000486404 RBMY1BA6NDE4 496 aaKnown RBP9.64□□□□□ -0.87
CHMP3-208ENST00000486404 RBMY1EA6NEQ0 496 aaKnown RBP9.64□□□□□ -0.87
CHMP3-208ENST00000486404 RBMY1DP0C7P1 496 aaKnown RBP9.64□□□□□ -0.87
CHMP3-208ENST00000486404 LYL1P12980 280 aa9.64□□□□□ -0.87
CHMP3-208ENST00000486404 NPY1RP25929 384 aa9.64□□□□□ -0.87
CHMP3-208ENST00000486404 CCR6P51684 374 aa9.64□□□□□ -0.87
CHMP3-208ENST00000486404 BSXQ3C1V8 233 aa9.64□□□□□ -0.87
CHMP3-208ENST00000486404 NOXA1Q86UR1 476 aa9.64□□□□□ -0.87
CHMP3-208ENST00000486404 OR1S1Q8NH92 325 aa9.64□□□□□ -0.87
CHMP3-208ENST00000486404 OR10C1Q96KK4 312 aa9.64□□□□□ -0.87
CHMP3-208ENST00000486404 PUS1Q9Y606 427 aaKnown RBP eCLIP9.64□□□□□ -0.87
CHMP3-208ENST00000486404 IGKV3-7A0A075B6H7 116 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 IGHV3OR16-13A0A075B7E8 117 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 IGHV3-74A0A0B4J1X5 117 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 CHEK1O14757 476 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 CLN5O75503 358 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 IFNA10P01566 189 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 TFPI2P48307 235 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 SUPT4H1P63272 117 aaKnown RBP9.63□□□□□ -0.87
CHMP3-208ENST00000486404 C2orf83Q53S99 150 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 TMEM128Q5BJH2 165 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 PVRIGQ6DKI7 326 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 ETFRF1Q6IPR1 90 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 TOMM20LQ6UXN7 152 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 LINC00322Q6ZN03 302 aaPredicted RBP9.63□□□□□ -0.87
CHMP3-208ENST00000486404 CENPSQ8N2Z9 138 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 OR4X1Q8NH49 305 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 RNASEH2CQ8TDP1 164 aaKnown RBP9.63□□□□□ -0.87
CHMP3-208ENST00000486404 NARS2Q96I59 477 aaKnown RBP9.63□□□□□ -0.87
CHMP3-208ENST00000486404 RNF2Q99496 336 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 SLC25A21Q9BQT8 299 aaPredicted RBP9.63□□□□□ -0.87
CHMP3-208ENST00000486404 SRRQ9GZT4 340 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 FNDC4Q9H6D8 234 aaPredicted RBP9.63□□□□□ -0.87
CHMP3-208ENST00000486404 TMEM231Q9H6L2 316 aa9.63□□□□□ -0.87
CHMP3-208ENST00000486404 HUWE1Q7Z6Z7 4374 aaKnown RBP9.62□□□□□ -0.87
CHMP3-208ENST00000486404 TRAV30A0A087WSZ9 112 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 DUXBA0A1W2PPF3 345 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 CD5P06127 495 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 SLC25A4P12235 298 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 RND2P52198 227 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 APOC4P55056 127 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 PAFAH1B2P68402 229 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 TNFRSF9Q07011 255 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 RBMS2Q15434 407 aaKnown RBP9.62□□□□□ -0.87
CHMP3-208ENST00000486404 NMSQ5H8A3 153 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 LYZL2Q7Z4W2 148 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 DTD1Q8TEA8 209 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 METTL26Q96S19 204 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 ZFAND3Q9H8U3 227 aa9.62□□□□□ -0.87
CHMP3-208ENST00000486404 IGHV3-66A0A0C4DH42 116 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 A0A1B0GU03 582 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 TMEM50AO95807 157 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 RPL11P62913 178 aaKnown RBP9.61□□□□□ -0.87
CHMP3-208ENST00000486404 ODF3L2Q3SX64 289 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 TIGITQ495A1 244 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 TCF24Q7RTU0 167 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 OR1S2Q8NGQ3 325 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 ST8SIA2Q92186 375 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 ACY3Q96HD9 319 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 RBKSQ9H477 322 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 MRPL36Q9P0J6 103 aaKnown RBP9.61□□□□□ -0.87
CHMP3-208ENST00000486404 HSPB7Q9UBY9 170 aa9.61□□□□□ -0.87
CHMP3-208ENST00000486404 A0A1W2PS18 150 aa9.6□□□□□ -0.87
CHMP3-208ENST00000486404 NAP1L6A6NFF2 107 aa9.6□□□□□ -0.87
CHMP3-208ENST00000486404 CENPXA8MT69 81 aa9.6□□□□□ -0.87
CHMP3-208ENST00000486404 DNASE2O00115 360 aaPredicted RBP9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms