RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 CNBPP62633 177 aaKnown RBP0.24□□□□□ -2.37
VPS50-217ENST00000485140 C1orf137Q5JT78 98 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 LPCAT4Q643R3 524 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 PDPK2PQ6A1A2 396 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 TRAPPC6BQ86SZ2 158 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 GKN2Q86XP6 184 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 SIGLECL1Q8N7X8 197 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 TERB2Q8NHR7 220 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 TOMM6Q96B49 74 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 OR52E6Q96RD3 313 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 OR51I1Q9H343 314 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 FBXL12Q9NXK8 326 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 HS3ST2Q9Y278 367 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 ERGIC3Q9Y282 383 aa0.24□□□□□ -2.37
VPS50-217ENST00000485140 NAV2Q8IVL1 2488 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 DPRXA6NFQ7 191 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 CCDC160A6NGH7 325 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 ZNF736B4DX44 427 aaPredicted RBP0.23□□□□□ -2.37
VPS50-217ENST00000485140 EEF1E1-BLOC1S5C9J1V9 151 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 PSMD12O00232 456 aaPredicted RBP0.23□□□□□ -2.37
VPS50-217ENST00000485140 FAAHO00519 579 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 LYZL6O75951 148 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 ZNF25P17030 456 aaPredicted RBP0.23□□□□□ -2.37
VPS50-217ENST00000485140 S100A4P26447 101 aaKnown RBP0.23□□□□□ -2.37
VPS50-217ENST00000485140 TCL1AP56279 114 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 PSME3P61289 254 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 FAM74A1Q5RGS3 127 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 SFXN4Q6P4A7 337 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 CD200R1LQ6Q8B3 271 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 OR51D1Q8NGF3 324 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 TEX47Q8TBZ9 253 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 H1FXQ92522 213 aaKnown RBP0.23□□□□□ -2.37
VPS50-217ENST00000485140 GPR146Q96CH1 333 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 CFAP53Q96M91 514 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 MRPS26Q9BYN8 205 aaKnown RBP0.23□□□□□ -2.37
VPS50-217ENST00000485140 NIT2Q9NQR4 276 aa0.23□□□□□ -2.37
VPS50-217ENST00000485140 DNAL4O96015 105 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 CD79AP11912 226 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 PSG9Q00887 426 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 HIST3H3Q16695 136 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 SPOPLQ6IQ16 392 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 C3orf56Q8N813 242 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 OR10J5Q8NHC4 309 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 KLK6Q92876 244 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 SLC35B4Q969S0 331 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 NIPSNAP1Q9BPW8 284 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 C10orf95Q9H7T3 257 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 XPNPEP1Q9NQW7 623 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 OSTCQ9NRP0 149 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 NKIRAS1Q9NYS0 192 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 TMEM56-RWDD3S4R434 201 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 CEP192Q8TEP8 1941 aa0.22□□□□□ -2.37
VPS50-217ENST00000485140 DENND4CQ5VZ89 1909 aa0.21□□□□□ -2.38
VPS50-217ENST00000485140 EXOC1LA0A1B0GW35 172 aa0.21□□□□□ -2.38
VPS50-217ENST00000485140 CRYZL1O95825 349 aa0.21□□□□□ -2.38
VPS50-217ENST00000485140 TNNC2P02585 160 aa0.21□□□□□ -2.38
VPS50-217ENST00000485140 CALB1P05937 261 aa0.21□□□□□ -2.38
VPS50-217ENST00000485140 TPM3P06753 285 aa0.21□□□□□ -2.38
VPS50-217ENST00000485140 YPEL3P61236 119 aaPredicted RBP0.21□□□□□ -2.38
VPS50-217ENST00000485140 SNRPD2P62316 118 aaKnown RBP0.21□□□□□ -2.38
VPS50-217ENST00000485140 ANKRD29Q8N6D5 301 aa0.21□□□□□ -2.38
VPS50-217ENST00000485140 C6orf62Q9GZU0 229 aaPredicted RBP0.21□□□□□ -2.38
VPS50-217ENST00000485140 TMEM14CQ9P0S9 112 aa0.21□□□□□ -2.38
VPS50-217ENST00000485140 MAST4O15021 2626 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 MYO3BQ8WXR4 1341 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 C7orf71A4D174 169 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 OR2T8A6NH00 312 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 ANP32AP39687 249 aaKnown RBP0.2□□□□□ -2.38
VPS50-217ENST00000485140 EFNA4P52798 201 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 SPCS3P61009 180 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 MAGOHP61326 146 aaKnown RBP0.2□□□□□ -2.38
VPS50-217ENST00000485140 TPM4P67936 248 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 CCDC122Q5T0U0 273 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 CLECL1Q8IZS7 167 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 OR13D1Q8NGV5 346 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 C11orf68Q9H3H3 251 aaKnown RBP0.2□□□□□ -2.38
VPS50-217ENST00000485140 CMTM6Q9NX76 183 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 TP73-AS1Q9UF72 201 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 EPDR1Q9UM22 224 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 FSIP2Q5CZC0 6907 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 SCN3AQ9NY46 2000 aa0.2□□□□□ -2.38
VPS50-217ENST00000485140 NUP155O75694 1391 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 E9PCH4 1651 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 PIRO00625 290 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 CCL25O15444 150 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 CDC42P60953 191 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 ALKAL1Q6UXT8 129 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 LINC00322Q6ZN03 302 aaPredicted RBP0.19□□□□□ -2.38
VPS50-217ENST00000485140 LCA10Q71F78 164 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 KRT222Q8N1A0 295 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 LINC00301Q8NCQ3 95 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 PLPP5Q8NEB5 264 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 DCUN1D1Q96GG9 259 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 SMR3AQ99954 134 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 C20orf27Q9GZN8 174 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 CCDC90BQ9GZT6 254 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 C14orf132Q9NPU4 83 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 ATP6V1DQ9Y5K8 247 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 MCM3APO60318 1980 aa0.19□□□□□ -2.38
VPS50-217ENST00000485140 ZNF462Q96JM2 2506 aa0.19□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms