RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 A0A1W2PS18 150 aa12.81□□□□□ -0.36
COL7A1-208ENST00000470076 CLN5O75503 358 aa12.81□□□□□ -0.36
COL7A1-208ENST00000470076 SCGB2A1O75556 95 aa12.81□□□□□ -0.36
COL7A1-208ENST00000470076 CA1P00915 261 aaPredicted RBP12.81□□□□□ -0.36
COL7A1-208ENST00000470076 NPPCP23582 126 aa12.81□□□□□ -0.36
COL7A1-208ENST00000470076 UCP1P25874 307 aa12.81□□□□□ -0.36
COL7A1-208ENST00000470076 RPL5P46777 297 aaKnown RBP12.81□□□□□ -0.36
COL7A1-208ENST00000470076 DEFB131AP59861 70 aa12.81□□□□□ -0.36
COL7A1-208ENST00000470076 C11orf45Q8TAV5 145 aa12.81□□□□□ -0.36
COL7A1-208ENST00000470076 GABARAPO95166 117 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 CD74P04233 296 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 OPRK1P41145 380 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 TAS2R19P59542 299 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 TMEM187Q14656 261 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 CTF1Q16619 201 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 SP6Q3SY56 376 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 LGALS9CQ6DKI2 356 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 TMEM229BQ8NBD8 167 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 OR4D10Q8NGI6 311 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 OR13C8Q8NGS7 320 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 OR4X1Q8NH49 305 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 RNASE11Q8TAA1 199 aaKnown RBP12.8□□□□□ -0.36
COL7A1-208ENST00000470076 METTL26Q96S19 204 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 ABHD1Q96SE0 405 aa12.8□□□□□ -0.36
COL7A1-208ENST00000470076 FNDC4Q9H6D8 234 aaPredicted RBP12.8□□□□□ -0.36
COL7A1-208ENST00000470076 RAB3DO95716 219 aa12.79□□□□□ -0.36
COL7A1-208ENST00000470076 IFNA4P05014 189 aa12.79□□□□□ -0.36
COL7A1-208ENST00000470076 RBMS2Q15434 407 aaKnown RBP12.79□□□□□ -0.36
COL7A1-208ENST00000470076 BSXQ3C1V8 233 aa12.79□□□□□ -0.36
COL7A1-208ENST00000470076 SCGB2B2Q4G0G5 96 aa12.79□□□□□ -0.36
COL7A1-208ENST00000470076 LEMD1Q68G75 181 aa12.79□□□□□ -0.36
COL7A1-208ENST00000470076 FAM219AQ8IW50 185 aa12.79□□□□□ -0.36
COL7A1-208ENST00000470076 RABAC1Q9UI14 185 aa12.79□□□□□ -0.36
COL7A1-208ENST00000470076 TRAV30A0A087WSZ9 112 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 A0A0G2JRQ6 117 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 CRYBB3P26998 211 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 NANOS2P60321 138 aaKnown RBP12.78□□□□□ -0.36
COL7A1-208ENST00000470076 SPCS3P61009 180 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 SSBP1Q04837 148 aaKnown RBP12.78□□□□□ -0.36
COL7A1-208ENST00000470076 AARDQ4LEZ3 155 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 STEAP1BQ6NZ63 245 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 STHQ8IWL8 128 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 FAM24BQ8N5W8 94 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 MARCH1Q8TCQ1 289 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 TMEM230Q96A57 120 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 NARS2Q96I59 477 aaKnown RBP12.78□□□□□ -0.36
COL7A1-208ENST00000470076 NAA50Q9GZZ1 169 aaKnown RBP12.78□□□□□ -0.36
COL7A1-208ENST00000470076 TMEM222Q9H0R3 208 aa12.78□□□□□ -0.36
COL7A1-208ENST00000470076 MRPL36Q9P0J6 103 aaKnown RBP12.78□□□□□ -0.36
COL7A1-208ENST00000470076 GABARAPH6UMI1 98 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 CDS2O95674 445 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 HTR2BP41595 481 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 MLANAQ16655 118 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 Q6ZRM9 215 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 RPP25LQ8N5L8 163 aaKnown RBP12.77□□□□□ -0.37
COL7A1-208ENST00000470076 STXBP6Q8NFX7 210 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 OR52E5Q8NH55 327 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 GRAMD2BQ96HH9 432 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.77□□□□□ -0.37
COL7A1-208ENST00000470076 FBXL17Q9UF56 701 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 AGRNO00468 2067 aa12.77□□□□□ -0.37
COL7A1-208ENST00000470076 RPS10-NUDT3A0A1W2PQS6 291 aa12.76□□□□□ -0.37
COL7A1-208ENST00000470076 K7EQG2 157 aa12.76□□□□□ -0.37
COL7A1-208ENST00000470076 IGKV1-17P01599 117 aa12.76□□□□□ -0.37
COL7A1-208ENST00000470076 P2RY1P47900 373 aa12.76□□□□□ -0.37
COL7A1-208ENST00000470076 MRPS10P82664 201 aaKnown RBP12.76□□□□□ -0.37
COL7A1-208ENST00000470076 MEF2DQ14814 521 aa12.76□□□□□ -0.37
COL7A1-208ENST00000470076 TMEM41BQ5BJD5 291 aa12.76□□□□□ -0.37
COL7A1-208ENST00000470076 C14orf166Q9Y224 244 aaKnown RBP12.76□□□□□ -0.37
COL7A1-208ENST00000470076 TEX13DA0A0J9YY54 714 aaPredicted RBP12.75□□□□□ -0.37
COL7A1-208ENST00000470076 OR5AC1P0C628 307 aa12.75□□□□□ -0.37
COL7A1-208ENST00000470076 EIF2B2P49770 351 aaKnown RBP12.75□□□□□ -0.37
COL7A1-208ENST00000470076 TCTAP57738 103 aa12.75□□□□□ -0.37
COL7A1-208ENST00000470076 SURF2Q15527 256 aaPredicted RBP12.75□□□□□ -0.37
COL7A1-208ENST00000470076 TIGITQ495A1 244 aa12.75□□□□□ -0.37
COL7A1-208ENST00000470076 GPR107Q5VW38 600 aa12.75□□□□□ -0.37
COL7A1-208ENST00000470076 MORN3Q6PF18 240 aaPredicted RBP12.75□□□□□ -0.37
COL7A1-208ENST00000470076 TRPT1Q86TN4 253 aaKnown RBP12.75□□□□□ -0.37
COL7A1-208ENST00000470076 C2CD4CQ8TF44 421 aa12.75□□□□□ -0.37
COL7A1-208ENST00000470076 GLYATL2Q8WU03 294 aa12.75□□□□□ -0.37
COL7A1-208ENST00000470076 RBPMSQ93062 196 aaKnown RBP12.75□□□□□ -0.37
COL7A1-208ENST00000470076 HEYLQ9NQ87 328 aaPredicted RBP12.75□□□□□ -0.37
COL7A1-208ENST00000470076 DEFB4AO15263 64 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 RGS5O15539 181 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 DEDDO75618 318 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 SMIM18P0DKX4 95 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 SPP1P10451 314 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 SLC25A4P12235 298 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 DHODHQ02127 395 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 C2orf83Q53S99 150 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 OR1S2Q8NGQ3 325 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 LHFPL5Q8TAF8 219 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 RNASEH2CQ8TDP1 164 aaKnown RBP12.74□□□□□ -0.37
COL7A1-208ENST00000470076 DCANP1Q8TF63 244 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 RTBDNQ9BSG5 229 aaPredicted RBP12.74□□□□□ -0.37
COL7A1-208ENST00000470076 MIXL1Q9H2W2 232 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 HRH4Q9H3N8 390 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 NAA60Q9H7X0 242 aa12.74□□□□□ -0.37
COL7A1-208ENST00000470076 DNAH10Q8IVF4 4471 aa12.73□□□□□ -0.37
COL7A1-208ENST00000470076 HELTA6NFD8 242 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms