RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 KPNA4O00629 521 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-207ENST00000468384 PIAS1O75925 651 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 TNFAIP8O95379 198 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 PSKH1P11801 424 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 GATA2P23769 480 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-207ENST00000468384 HLA-DMAP28067 261 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 HTR1FP30939 366 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 CDKN2CP42773 168 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 PRR3P79522 188 aaKnown RBP2.96□□□□□ -1.94
HMGB1-207ENST00000468384 OR1Q1Q15612 314 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 ZNF79Q15937 498 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 SNCBQ16143 134 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 KDM4DQ6B0I6 523 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 ELP2Q6IA86 826 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 DRAM2Q6UX65 266 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 FAM223AQ8IWN6 122 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 NATD1Q8N6N6 113 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 TCTEX1D2Q8WW35 142 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 REEP6Q96HR9 211 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 OPRPNQ99935 248 aaPredicted RBP2.96□□□□□ -1.94
HMGB1-207ENST00000468384 TMEM27Q9HBJ8 222 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 IMPAD1Q9NX62 359 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 IDI2-AS1Q9NZ38 188 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 DHRS4-AS1Q9P1J3 65 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 TMCO1Q9UM00 188 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 UFC1Q9Y3C8 167 aa2.96□□□□□ -1.94
HMGB1-207ENST00000468384 AHNAKQ09666 5890 aaKnown RBP2.96□□□□□ -1.94
HMGB1-207ENST00000468384 IGKV3-7A0A075B6H7 116 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 FUOMA2VDF0 154 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 TVP23AA6NH52 213 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 A6NIZ1 184 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 ISLRO14498 428 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 MPDU1O75352 247 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 HLA-GP17693 338 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 EVI2AP22794 236 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 IL3RAP26951 378 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 RPL29P47914 159 aaKnown RBP2.95□□□□□ -1.94
HMGB1-207ENST00000468384 RAP1BP61224 184 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 RAP1AP62834 184 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 TPBGQ13641 420 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 GNMTQ14749 295 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 UBE2UQ5VVX9 321 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 ZNF613Q6PF04 617 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 TMUB2Q71RG4 321 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 STX12Q86Y82 276 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 CLECL1Q8IZS7 167 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 Q8N377 158 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 ZNF502Q8TBZ5 544 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 PPP1R36Q96LQ0 422 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 RERGLQ9H628 205 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 LRRC42Q9Y546 428 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 SAR1BQ9Y6B6 198 aa2.95□□□□□ -1.94
HMGB1-207ENST00000468384 OR2T8A6NH00 312 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 SMIM23A6NLE4 172 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 KNCNA6PVL3 124 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 J3QT63 122 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 DCTN6O00399 190 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 SLC16A7O60669 478 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 ZNF253O75346 499 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 CA2P00918 260 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 CRYGDP07320 174 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 PET100P0DJ07 73 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 M6PRP20645 277 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 CRABP2P29373 138 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 MAGEA12P43365 314 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 SERPINB8P50452 374 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 IFFO1Q0D2I5 559 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 FXYD3Q14802 87 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 ATP6V1FQ16864 119 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 CEACAM21Q3KPI0 293 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 AHSA2Q719I0 299 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 LINC00311Q8N616 119 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 LINC00467Q9BRT7 94 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 DCUN1D5Q9BTE7 237 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 LINC00574Q9H8X3 128 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 RRAGDQ9NQL2 400 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-207ENST00000468384 C1orf109Q9NX04 203 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 CALYQ9NYX4 217 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 CCDC59Q9P031 241 aaKnown RBP2.94□□□□□ -1.94
HMGB1-207ENST00000468384 V9GYQ6 96 aa2.94□□□□□ -1.94
HMGB1-207ENST00000468384 LYRM9A8MSI8 78 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 SULT1C2O00338 296 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 SOX14O95416 240 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 PRH1P02810 166 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 TSPAN19P0C672 248 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 IL12AP29459 219 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 RANBP1P43487 201 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 YAP1P46937 504 aaKnown RBP2.93□□□□□ -1.94
HMGB1-207ENST00000468384 VSNL1P62760 191 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 CASP8Q14790 479 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 C15orf32Q32M92 178 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 TTC33Q6PID6 262 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-207ENST00000468384 TMED4Q7Z7H5 227 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 FAM24BQ8N5W8 94 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 ZNF439Q8NDP4 499 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 RNASEH2CQ8TDP1 164 aaKnown RBP2.93□□□□□ -1.94
HMGB1-207ENST00000468384 VN1R17PQ8TDU5 208 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 GHSRQ92847 366 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 COPS4Q9BT78 406 aa2.93□□□□□ -1.94
HMGB1-207ENST00000468384 ZNF426Q9BUY5 554 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms