RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 Q6ZWC4 215 aa10.35□□□□□ -0.75
USP4-206ENST00000461553 KIR2DL5AQ8N109 375 aa10.35□□□□□ -0.75
USP4-206ENST00000461553 STPG3Q8N7X2 389 aa10.35□□□□□ -0.75
USP4-206ENST00000461553 KIR2DL5BQ8NHK3 375 aa10.35□□□□□ -0.75
USP4-206ENST00000461553 DYNC2LI1Q8TCX1 351 aa10.35□□□□□ -0.75
USP4-206ENST00000461553 GALNT14Q96FL9 552 aa10.35□□□□□ -0.75
USP4-206ENST00000461553 PUS1Q9Y606 427 aaKnown RBP eCLIP10.35□□□□□ -0.75
USP4-206ENST00000461553 CRYM-AS1A6NIL9 109 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 SPRY2O43597 315 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 CDS2O95674 445 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 CMC4P56277 68 aaPredicted RBP10.34□□□□□ -0.75
USP4-206ENST00000461553 SPCS3P61009 180 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 PAFAH1B2P68402 229 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 PVRIGQ6DKI7 326 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 TOMM20LQ6UXN7 152 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 TCF24Q7RTU0 167 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 OR51S1Q8NGJ8 323 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 ST8SIA2Q92186 375 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 RTBDNQ9BSG5 229 aaPredicted RBP10.34□□□□□ -0.75
USP4-206ENST00000461553 TMEM231Q9H6L2 316 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 ZFAND3Q9H8U3 227 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.34□□□□□ -0.75
USP4-206ENST00000461553 CACNG5Q9UF02 275 aa10.34□□□□□ -0.75
USP4-206ENST00000461553 RSL24D1Q9UHA3 163 aaKnown RBP10.34□□□□□ -0.75
USP4-206ENST00000461553 RPS10-NUDT3A0A1W2PQS6 291 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 ANKRD20A5PA0PJZ0 165 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 CLN5O75503 358 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 HTR2BP41595 481 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 AARDQ4LEZ3 155 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 TMEM268Q5VZI3 342 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 WFDC3Q8IUB2 231 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 APRG1Q8IVJ8 170 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 OR52E5Q8NH55 327 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 LHFPL5Q8TAF8 219 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 GLYATL2Q8WU03 294 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 SCGB3A2Q96PL1 93 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 MAP6D1Q9H9H5 199 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 SCP2D1Q9UJQ7 156 aa10.33□□□□□ -0.76
USP4-206ENST00000461553 A0A0J9YWU9 116 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 CEBPZOSA8MTT3 80 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 H3BMQ9 156 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 DNASE2O00115 360 aaPredicted RBP10.32□□□□□ -0.76
USP4-206ENST00000461553 GSTZ1O43708 216 aaPredicted RBP10.32□□□□□ -0.76
USP4-206ENST00000461553 TMEM50AO95807 157 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 RPL5P46777 297 aaKnown RBP10.32□□□□□ -0.76
USP4-206ENST00000461553 BSXQ3C1V8 233 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 FAM90A2PQ658T7 463 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 Q6ZRM9 215 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 LYG2Q86SG7 212 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 SELENOHQ8IZQ5 122 aaKnown RBP10.32□□□□□ -0.76
USP4-206ENST00000461553 GBGT1Q8N5D6 347 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 SLC24A4Q8NFF2 622 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 OR4X1Q8NH49 305 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 NARS2Q96I59 477 aaKnown RBP10.32□□□□□ -0.76
USP4-206ENST00000461553 METTL26Q96S19 204 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 FNDC4Q9H6D8 234 aaPredicted RBP10.32□□□□□ -0.76
USP4-206ENST00000461553 VSIRQ9H7M9 311 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 HEYLQ9NQ87 328 aaPredicted RBP10.32□□□□□ -0.76
USP4-206ENST00000461553 MCUBQ9NWR8 336 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 CACFD1Q9UGQ2 172 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 GPR132Q9UNW8 380 aa10.32□□□□□ -0.76
USP4-206ENST00000461553 TRAV30A0A087WSZ9 112 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 IGHV3-66A0A0C4DH42 116 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 A0A1B0GU03 582 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 A0A1W2PS18 150 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 CXorf65A6NEN9 183 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 RPL11P62913 178 aaKnown RBP10.31□□□□□ -0.76
USP4-206ENST00000461553 TNFRSF9Q07011 255 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 PMS2P11Q13670 270 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 ZNF124Q15973 351 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 IL22RA2Q969J5 263 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 GPR146Q96CH1 333 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 RNF183Q96D59 192 aa10.31□□□□□ -0.76
USP4-206ENST00000461553 SLIRPQ9GZT3 109 aaKnown RBP10.31□□□□□ -0.76
USP4-206ENST00000461553 MRPL36Q9P0J6 103 aaKnown RBP10.31□□□□□ -0.76
USP4-206ENST00000461553 EPPK1P58107 5090 aaKnown RBP10.31□□□□□ -0.76
USP4-206ENST00000461553 AGRNO00468 2067 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 TRAV2A0A0B4J234 112 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 FABP12A6NFH5 140 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 NXPH3O95157 252 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 APOHP02749 345 aaPredicted RBP10.3□□□□□ -0.76
USP4-206ENST00000461553 SULT1A3P0DMM9 295 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 SULT1A4P0DMN0 295 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 NPPCP23582 126 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 FAUP35544 74 aaKnown RBP10.3□□□□□ -0.76
USP4-206ENST00000461553 C2orf83Q53S99 150 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 TMEM217Q8N7C4 229 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 MCFD2Q8NI22 146 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 TMEM230Q96A57 120 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 MS4A6AQ9H2W1 248 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 RABAC1Q9UI14 185 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 KCNIP3Q9Y2W7 256 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 TMEM56-RWDD3S4R434 201 aa10.3□□□□□ -0.76
USP4-206ENST00000461553 NUPR2A6NF83 97 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 MPTX1A8MV57 137 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 DFFBO76075 338 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 SLC25A4P12235 298 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 ANXA3P12429 323 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 NPY1RP25929 384 aa10.29□□□□□ -0.76
USP4-206ENST00000461553 RND2P52198 227 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms