RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ATOH7Q8N100 152 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 THAP8Q8NA92 274 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 ZFP62Q8NB50 900 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 OR8S1Q8NH09 359 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 OR10AG1Q8NH19 301 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 SRSF12Q8WXF0 261 aaKnown RBP3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 SDR39U1Q9NRG7 319 aaPredicted RBP3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 KCNIP2Q9NS61 270 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 C21orf62Q9NYP8 219 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 PYGO1Q9Y3Y4 419 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 CKAP5Q14008 2032 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 FREM2Q5SZK8 3169 aa3.87□□□□□ -1.79
CCDC88A-209ENST00000456975 A0A1B0GTH9 108 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 MEIS3P1A6NDR6 274 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 M0R1B8 84 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 OVOL3O00110 214 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 TNFSF12O43508 249 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 GSTZ1O43708 216 aaPredicted RBP3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 P01737 135 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 PPIBP23284 216 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 NMUP48645 174 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 TAS2R19P59542 299 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 SEC11AP67812 179 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 FOXF2Q12947 444 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 HES1Q14469 280 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF542PQ5EBM4 170 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 LYRM7Q5U5X0 104 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 NCBP2-AS2Q69YL0 99 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 C9orf139Q6ZV77 190 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 C17orf64Q86WR6 236 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 PRIMA1Q86XR5 153 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 CT55Q8WUE5 264 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 POP5Q969H6 163 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 DPH3Q96FX2 82 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 RHNO1Q9BSD3 238 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 SCRT1Q9BWW7 348 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 TM2D1Q9BX74 207 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 PARLQ9H300 379 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 MAP6D1Q9H9H5 199 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 STARD5Q9NSY2 213 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 SPCS1Q9Y6A9 102 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 GOLGA4Q13439 2230 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 IGHV1OR15-9A0A0B4J2B8 117 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 FAM240AA0A1B0GVK7 77 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 LY6LH3BQJ8 138 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 NDUFS7O75251 213 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 JTBO76095 146 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 LINC00869P0C866 280 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 LIFP15018 202 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 RPS4Y1P22090 263 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 FKBP2P26885 142 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 PFN2P35080 140 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 GNB2P62879 340 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 FOXF1Q12946 379 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 MPV17LQ2QL34 196 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF718Q3SXZ3 478 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 FHL5Q5TD97 284 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 C22orf39Q6P5X5 142 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 MRPL55Q7Z7F7 128 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 SGPP2Q8IWX5 399 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 Q8N976 141 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 NEURL3Q96EH8 262 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 PYGO2Q9BRQ0 406 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 GLIPR2Q9H4G4 154 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 NOP16Q9Y3C1 178 aaKnown RBP3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 ASXL3Q9C0F0 2248 aa3.86□□□□□ -1.79
CCDC88A-209ENST00000456975 hCG_1818297A0A087WSY0 165 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 TRAV14DV4A0A0A6YYC5 116 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 TCRBV9S1A1TA0A576 114 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 NAP1L6A6NFF2 107 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 APOHP02749 345 aaPredicted RBP3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 OPRK1P41145 380 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 MARCKSL1P49006 195 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 PPP1CBP62140 327 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 Q499Y3 187 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 FRG2Q64ET8 278 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 TOMM5Q8N4H5 51 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 OR4X2Q8NGF9 303 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 OR10J6PQ8NGY7 276 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 APOBEC4Q8WW27 367 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 GPR21Q99679 349 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 NRN1Q9NPD7 142 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 COL6A6A6NMZ7 2263 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 HECTD1Q9ULT8 2610 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 A0A0U1RQV1 116 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 A0A1W2PPM0 123 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 NCBP2LA6PVI3 153 aaKnown RBP3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 OOSP1A8MZH6 123 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 TMEM262E9PQX1 116 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 SLC17A2O00624 439 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 SOCS1O15524 211 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 DPM2O94777 84 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 ATP4BP51164 291 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 P2RX1P51575 399 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 ZNF85Q03923 595 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 CST6Q15828 149 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 SP6Q3SY56 376 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 TECRLQ5HYJ1 363 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 PIK3CD-AS1Q5SR53 167 aa3.85□□□□□ -1.79
CCDC88A-209ENST00000456975 FAM201AQ5SY85 155 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms