RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ZNF714Q96N38 554 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 SERTM2A0A1B0GWG4 89 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 C20orf202A1L168 122 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 TNFSF13O75888 250 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 TCTAP57738 103 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 VWC2Q2TAL6 325 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 ERASQ7Z444 233 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 RNF2Q99496 336 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 WDFY4Q6ZS81 3184 aa9.73□□□□□ -0.85
MSH6-204ENST00000445503 HCFC1P51610 2035 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 PRRG2O14669 202 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 WNT2P09544 360 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 P0C879 139 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 HES1Q14469 280 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 LINC00305Q7Z4B0 112 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 SFXN3Q9BWM7 321 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 ZNF430Q9H8G1 570 aaPredicted RBP9.72□□□□□ -0.85
MSH6-204ENST00000445503 ASCL3Q9NQ33 180 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 TNFRSF19Q9NS68 423 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 FBXL7Q9UJT9 491 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 A0A1W2PN81 502 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 P01737 135 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 TDGF1P3P51864 188 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 PRCDQ00LT1 54 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 TCF24Q7RTU0 167 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 SPRY4Q9C004 299 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 UQCR10Q9UDW1 63 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 FOXA2Q9Y261 457 aaPredicted RBP9.72□□□□□ -0.85
MSH6-204ENST00000445503 SLC25A15Q9Y619 301 aa9.72□□□□□ -0.85
MSH6-204ENST00000445503 HIST1H1EP10412 219 aaKnown RBP9.71□□□□□ -0.85
MSH6-204ENST00000445503 COX19Q49B96 90 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 MBNL2Q5VZF2 373 aaKnown RBP9.71□□□□□ -0.85
MSH6-204ENST00000445503 SP5Q6BEB4 398 aaPredicted RBP9.71□□□□□ -0.85
MSH6-204ENST00000445503 VSTM2AQ8TAG5 236 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 PLSCR4Q9NRQ2 329 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 COL6A6A6NMZ7 2263 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 AREGP15514 252 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 COL8A1P27658 744 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 LOXL3P58215 753 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 CD69Q07108 199 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 TIMM23BQ5SRD1 257 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 CDC42EP3Q9UKI2 254 aa9.71□□□□□ -0.85
MSH6-204ENST00000445503 MALRD1Q5VYJ5 2156 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 PPIAL4EA0A075B759 164 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 PPIAL4DF5H284 164 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 IGHV1-46P01743 117 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 PPIAL4FP0DN26 164 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 TDGF1P13385 188 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 PMCHL1Q16048 86 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 KCNS1Q96KK3 526 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 OR8B2Q96RD0 313 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 DIRC2Q96SL1 478 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 CHRDL1Q9BU40 450 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 GNB1LQ9BYB4 327 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 BET1LQ9NYM9 111 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 TRBV9A0A0B4J1U6 114 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 FAM90A9PA6NNJ1 464 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 SRRM4A7MD48 611 aaKnown RBP9.71□□□□□ -0.86
MSH6-204ENST00000445503 GGTLC3B5MD39 225 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 PEX7O00628 323 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 ZNF324O75467 553 aaPredicted RBP9.71□□□□□ -0.86
MSH6-204ENST00000445503 GPX1P07203 203 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 PDLIM4P50479 330 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 YPEL3P61236 119 aaPredicted RBP9.71□□□□□ -0.86
MSH6-204ENST00000445503 CLEC2AQ6UVW9 174 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 CITED1Q99966 193 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 OSTCQ9NRP0 149 aa9.71□□□□□ -0.86
MSH6-204ENST00000445503 FREM2Q5SZK8 3169 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 HIGD1CA8MV81 97 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 MSMPQ1L6U9 139 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 PRNTQ86SH4 94 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 V9GYV3 84 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 TMSB15BA0A087X1C1 80 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 TRGV8A0A0C4DH27 118 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 C9JCJ5 164 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 HTR1DP28221 377 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 C17orf58Q2M2W7 97 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 PERPQ96FX8 193 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 RCHY1Q96PM5 261 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 TMEM208Q9BTX3 173 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 NBEAQ8NFP9 2946 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 F2RL2O00254 374 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 CX3CL1P78423 397 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 TBR1Q16650 682 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 TMEM177Q53S58 311 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 ZNF474Q6S9Z5 364 aaPredicted RBP9.7□□□□□ -0.86
MSH6-204ENST00000445503 SLC25A33Q9BSK2 321 aa9.7□□□□□ -0.86
MSH6-204ENST00000445503 KMT2EQ8IZD2 1858 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 M0QZ24 198 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 C3orf79P0CE67 100 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 C1orf185Q5T7R7 199 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 OR4C13Q8NGP0 309 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 TMEM14BQ9NUH8 114 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 CLEC5AQ9NY25 188 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 RPUSD1Q9UJJ7 312 aaKnown RBP9.69□□□□□ -0.86
MSH6-204ENST00000445503 ISLRO14498 428 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 HYPMO75409 117 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 CD40P25942 277 aa9.69□□□□□ -0.86
MSH6-204ENST00000445503 C1orf229Q6ZS94 237 aaPredicted RBP9.69□□□□□ -0.86
MSH6-204ENST00000445503 SSX8Q7RTT4 187 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms