RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TMEM229AB2RXF0 380 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 ZNF688P0C7X2 276 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 CCL11P51671 97 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 IL15RAQ13261 267 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 EPDR1Q9UM22 224 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 LILRA6Q6PI73 481 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 SBF1O95248 1867 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 C1QL3Q5VWW1 255 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 C8orf44Q96CB5 159 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 TMEM141Q96I45 108 aa6.08□□□□□ -1.44
VPS53-204ENST00000437048 TRAV8-1A0A0A6YYK1 113 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 PRR32B1ATL7 298 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 LEPROTO15243 131 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 NEU1Q99519 415 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 CST9LQ9H4G1 147 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 WDR83OSQ9Y284 106 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 B9A039 149 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 FCN3O75636 299 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 SCARF2Q96GP6 870 aaPredicted RBP6.07□□□□□ -1.44
VPS53-204ENST00000437048 XIRP1Q702N8 1843 aaKnown RBP6.07□□□□□ -1.44
VPS53-204ENST00000437048 MYMXA0A1B0GTQ4 84 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 PSMB11A5LHX3 300 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 FOXH1O75593 365 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 MOSP00540 346 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.07□□□□□ -1.448e-8■■■■■ 29.1
VPS53-204ENST00000437048 SEMA5BQ9P283 1151 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 SPINT1O43278 529 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 LHFPL1Q86WI0 220 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 UBL5Q9BZL1 73 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 LHFPL6Q9Y693 200 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 TTC28Q96AY4 2481 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 C9orf118A6NHY6 69 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 GAGE5Q13069 117 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 GAGE6Q13070 117 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 FAM231DQ6ZW35 169 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 BHLHA9Q7RTU4 235 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 H0YIZ8 118 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 GZMBP10144 247 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 FAM90A2PQ658T7 463 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 ZNF818PQ6ZRF7 136 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 VWC2LB2RUY7 222 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 ZNF83P51522 516 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 GLMPQ8WWB7 406 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 ZNF492Q9P255 531 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 A0A0G2JK05 382 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 VCYO14598 125 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 PRCDQ00LT1 54 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 C2orf82Q6UX34 121 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 LINC01551Q86U37 167 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 NXPH1P58417 271 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 PRSS53Q2L4Q9 553 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 UBE2WQ96B02 151 aa6.07□□□□□ -1.44
VPS53-204ENST00000437048 F11RQ9Y624 299 aaKnown RBP6.07□□□□□ -1.44
VPS53-204ENST00000437048 GFERP55789 205 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 KLF2Q9Y5W3 355 aaPredicted RBP6.06□□□□□ -1.44
VPS53-204ENST00000437048 ZNF815PA8K554 130 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 EFEMP2O95967 443 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 HLA-DMBP28068 263 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 LOXL3P58215 753 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 PDCD1Q15116 288 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 SPSB3Q6PJ21 355 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 RNF126Q9BV68 326 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 SLC25A53Q5H9E4 307 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 TPTE2P1Q5T6R2 138 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 RASL10AQ92737 203 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 SIP14410 1827 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 IGLV3-32A0A0A0MS00 114 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 DEFB108AA8MXU0 73 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 SPATA46Q5T0L3 261 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 PILRBQ9UKJ0 227 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 TRAV5A0A0B4J249 113 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 A0A1W2PPV9 198 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 WDR82Q6UXN9 313 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 CCL17Q92583 94 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 SMAD7O15105 426 aaKnown RBP6.06□□□□□ -1.44
VPS53-204ENST00000437048 TNFRSF6BO95407 300 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 TRACP01848 142 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 TRGV9Q99603 122 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 WNT10AQ9GZT5 417 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 FOXA2Q9Y261 457 aaPredicted RBP6.06□□□□□ -1.44
VPS53-204ENST00000437048 C5orf67F2Z3F1 127 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 KLHDC3Q9BQ90 382 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 TANC2Q9HCD6 1990 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 J3KT08 172 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 ATOX1O00244 68 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 RNF224P0DH78 156 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 WNT5AP41221 380 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 ATP6V0E2Q8NHE4 81 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 C1QTNF5Q9BXJ0 243 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 SEPSECSQ9HD40 501 aaKnown RBP6.06□□□□□ -1.44
VPS53-204ENST00000437048 LRRC37AA6NMS7 1700 aa6.06□□□□□ -1.44
VPS53-204ENST00000437048 SLAQ13239 276 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 A0A0G2JMZ2 1700 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 LRRC37A2A6NM11 1700 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 Q6ZT83 130 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 LHX9Q9NQ69 397 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 RHODO00212 210 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 PDE6GP18545 87 aa6.05□□□□□ -1.44
VPS53-204ENST00000437048 EIF4EBP2Q13542 120 aaPredicted RBP6.05□□□□□ -1.44
VPS53-204ENST00000437048 TEX45Q8NA69 505 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms