RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 Q6ZRM9 215 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 STXBP6Q8NFX7 210 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 OR13C8Q8NGS7 320 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 MARCH1Q8TCQ1 289 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 GATAD1Q8WUU5 269 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 ABHD1Q96SE0 405 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 NXPH3O95157 252 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 ZNF688P0C7X2 276 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 OPRK1P41145 380 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 TMEM187Q14656 261 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 RNASE11Q8TAA1 199 aaKnown RBP8.44□□□□□ -1.06
USP4-204ENST00000416417 PDCD10Q9BUL8 212 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 COPZ2Q9P299 210 aa8.44□□□□□ -1.06
USP4-204ENST00000416417 DNAH10Q8IVF4 4471 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 GIG44P09565 113 aaPredicted RBP8.43□□□□□ -1.06
USP4-204ENST00000416417 NPPCP23582 126 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 PVRIGQ6DKI7 326 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 MZT2AQ6P582 158 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 STHQ8IWL8 128 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 LHFPL5Q8TAF8 219 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 TMEM230Q96A57 120 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 ZNF486Q96H40 463 aaPredicted RBP8.43□□□□□ -1.06
USP4-204ENST00000416417 KRTAP17-1Q9BYP8 105 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 C11orf68Q9H3H3 251 aaKnown RBP8.43□□□□□ -1.06
USP4-204ENST00000416417 ENY2Q9NPA8 101 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 CLEC5AQ9NY25 188 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 MTFP1Q9UDX5 166 aa8.43□□□□□ -1.06
USP4-204ENST00000416417 K7EQG2 157 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 CLN5O75503 358 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 RAB3DO95716 219 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 IGKV1-17P01599 117 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 IFNA4P05014 189 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 RBMY1A1P0DJD3 496 aaKnown RBP8.42□□□□□ -1.06
USP4-204ENST00000416417 RBMY1CP0DJD4 496 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 C4BPBP20851 252 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 P2RY1P47900 373 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 SUB1P53999 127 aaKnown RBP eCLIP8.42□□□□□ -1.06
USP4-204ENST00000416417 MEF2DQ14814 521 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 RBMY1FQ15415 496 aaKnown RBP8.42□□□□□ -1.06
USP4-204ENST00000416417 CTF1Q16619 201 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 GPR107Q5VW38 600 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 LGALS9CQ6DKI2 356 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 TERB2Q8NHR7 220 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 RRNAD1Q96FB5 475 aaKnown RBP8.42□□□□□ -1.06
USP4-204ENST00000416417 MIXL1Q9H2W2 232 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 PRR13Q9NZ81 148 aa8.42□□□□□ -1.06
USP4-204ENST00000416417 VPS13DQ5THJ4 4388 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 IGHV4-28A0A0C4DH34 117 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 IGLL5B9A064 214 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 INS-IGF2F8WCM5 200 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 OR5AC1P0C628 307 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 SMIM18P0DKX4 95 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 UCP1P25874 307 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 GSG1LQ6UXU4 331 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 TRPT1Q86TN4 253 aaKnown RBP8.41□□□□□ -1.06
USP4-204ENST00000416417 ARRDC1Q8N5I2 433 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 Q8NAQ8 132 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 TMEM229BQ8NBD8 167 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 OR4X1Q8NH49 305 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 ZFAND1Q8TCF1 268 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 METTL26Q96S19 204 aa8.41□□□□□ -1.06
USP4-204ENST00000416417 GABARAPO95166 117 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 CD74P04233 296 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 ZNF182P17025 639 aaPredicted RBP8.4□□□□□ -1.06
USP4-204ENST00000416417 CRYBB3P26998 211 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 RND2P52198 227 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 ACTL10Q5JWF8 245 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 STEAP1BQ6NZ63 245 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 ZNF767PQ75MW2 155 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 CCDC71LQ8N9Z2 235 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 C2CD4CQ8TF44 421 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 GPR146Q96CH1 333 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 RTBDNQ9BSG5 229 aaPredicted RBP8.4□□□□□ -1.06
USP4-204ENST00000416417 MFFQ9GZY8 342 aa8.4□□□□□ -1.06
USP4-204ENST00000416417 HEYLQ9NQ87 328 aaPredicted RBP8.4□□□□□ -1.06
USP4-204ENST00000416417 TRAV2A0A0B4J234 112 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 TEX13DA0A0J9YY54 714 aaPredicted RBP8.39□□□□□ -1.07
USP4-204ENST00000416417 CORTO00230 105 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 CTDSP2O14595 271 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 ATG12O94817 140 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 CD5P06127 495 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 SPCS3P61009 180 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 DHRS2Q13268 280 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 BSXQ3C1V8 233 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 SELENOHQ8IZQ5 122 aaKnown RBP8.39□□□□□ -1.07
USP4-204ENST00000416417 DCANP1Q8TF63 244 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 GLYATL2Q8WU03 294 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 TMEM170AQ8WVE7 144 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 TMEM222Q9H0R3 208 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 TMEM231Q9H6L2 316 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 CACNG5Q9UF02 275 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 ELOA3CA0A087WX78 387 aaPredicted RBP8.39□□□□□ -1.07
USP4-204ENST00000416417 A0A1W2PS18 150 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 CEBPZOSA8MTT3 80 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 RGS5O15539 181 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 IGLC1P0CG04 106 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 TBPP20226 339 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 HLA-DMBP28068 263 aa8.39□□□□□ -1.07
USP4-204ENST00000416417 RPL5P46777 297 aaKnown RBP8.39□□□□□ -1.07
USP4-204ENST00000416417 TAS2R19P59542 299 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms