RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 SPATA45Q537H7 98 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 OR4A5Q8NH83 315 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 FGF23Q9GZV9 251 aaPredicted RBP9.23□□□□□ -0.93
PTPRF-204ENST00000412568 USP9XQ93008 2570 aaPredicted RBP9.23□□□□□ -0.93
PTPRF-204ENST00000412568 IGHV3-66A0A0C4DH42 116 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 K7ERU9 68 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 CGAP01215 116 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 LYL1P12980 280 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 CTAG1AP78358 180 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 MEF2CQ06413 473 aaPredicted RBP9.23□□□□□ -0.93
PTPRF-204ENST00000412568 TMEM133Q9H2Q1 129 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 RABAC1Q9UI14 185 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 SRSF7Q16629 238 aaKnown RBP eCLIP9.23□□□□□ -0.934e-7■■■■□ 20.9
PTPRF-204ENST00000412568 IGFL3Q6UXB1 125 aa9.23□□□□□ -0.93
PTPRF-204ENST00000412568 MST1LQ2TV78 715 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 DMRTA1Q5VZB9 504 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 TMEM183AQ8IXX5 376 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 MRPL18Q9H0U6 180 aaKnown RBP9.22□□□□□ -0.93
PTPRF-204ENST00000412568 DKK4Q9UBT3 224 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 TMEM250H0YL14 139 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 SMAD7O15105 426 aaKnown RBP9.22□□□□□ -0.93
PTPRF-204ENST00000412568 CBLN1P23435 193 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 ATP5G3P48201 142 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 GATAD1Q8WUU5 269 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 IFITM10A6NMD0 228 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 P01737 135 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 IGKV1-16P04430 117 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 IL4P05112 153 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 LEMD1Q68G75 181 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 C19orf35Q6ZS72 473 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 PIMREGQ9BSJ6 248 aa9.22□□□□□ -0.93
PTPRF-204ENST00000412568 COLCA2A8K830 154 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 M0QZ24 198 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 TIMM23O14925 209 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 TMEM50AO95807 157 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 ORM1P02763 201 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 C8orf88P0DMB2 117 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 CA7P43166 264 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 PDLIM4P50479 330 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 OR8A1Q8NGG7 326 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 FAM168AQ92567 244 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 GAFA1Q96PS6 74 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 IFI27L2Q9H2X8 130 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 MUC22E2RYF6 1773 aaPredicted RBP9.21□□□□□ -0.93
PTPRF-204ENST00000412568 SCGB1C2P0DMR2 95 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 HIST1H1BP16401 226 aaKnown RBP9.21□□□□□ -0.93
PTPRF-204ENST00000412568 LOXL3P58215 753 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 MLANAQ16655 118 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 OR4B1Q8NGF8 309 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 MAP1LC3CQ9BXW4 147 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 UQCR10Q9UDW1 63 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 SELENOKQ9Y6D0 94 aa9.21□□□□□ -0.93
PTPRF-204ENST00000412568 PGPEP1LA6NFU8 196 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 THBDP07204 575 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 GCHFRP30047 84 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 TAS2R60P59551 318 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 ZNF585BQ52M93 769 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 SPRNQ5BIV9 151 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 MIR17HGQ75NE6 70 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 DPF1Q92782 380 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 C7orf69Q9H7B7 122 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 HSPB7Q9UBY9 170 aa9.21□□□□□ -0.94
PTPRF-204ENST00000412568 FOXA2Q9Y261 457 aaPredicted RBP9.21□□□□□ -0.94
PTPRF-204ENST00000412568 UPK2O00526 184 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 UQCRFS1P47985 274 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 SELENOTP62341 195 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 BPIFA4PQ86YQ2 179 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 NEU4Q8WWR8 484 aaPredicted RBP9.2□□□□□ -0.94
PTPRF-204ENST00000412568 PARD6GQ9BYG4 376 aaPredicted RBP9.2□□□□□ -0.94
PTPRF-204ENST00000412568 NDUFS6O75380 124 aaKnown RBP9.2□□□□□ -0.94
PTPRF-204ENST00000412568 TGFAP01135 160 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 SRIP30626 198 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 Q6ZS49 121 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 LINC00305Q7Z4B0 112 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H2BKO60814 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H2BJP06899 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H2BOP23527 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H2BBP33778 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H2BDP58876 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H2BCP62807 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST2H2BEQ16778 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 KLF17Q5JT82 389 aaPredicted RBP9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.2□□□□□ -0.94
PTPRF-204ENST00000412568 GFI1BQ5VTD9 330 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HEPN1Q6WQI6 88 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 CYP2G1PQ6ZSU1 146 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H2BHQ93079 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H2BNQ99877 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 HIST1H2BMQ99879 126 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 SDF2L1Q9HCN8 221 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 TRBV6-6A0A0A6YYG2 114 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 C15orf61A6NNL5 157 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 FOXH1O75593 365 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 MMP23AO75900 390 aa9.2□□□□□ -0.94
PTPRF-204ENST00000412568 CEACAM8P31997 349 aaPredicted RBP9.2□□□□□ -0.94
PTPRF-204ENST00000412568 COMPP49747 757 aaPredicted RBP9.2□□□□□ -0.94
PTPRF-204ENST00000412568 RPP25LQ8N5L8 163 aaKnown RBP9.2□□□□□ -0.94
PTPRF-204ENST00000412568 Q1RN00 199 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 C5orf17Q8NAS9 161 aa9.19□□□□□ -0.94
PTPRF-204ENST00000412568 IMMP2LQ96T52 175 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms