RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 PAX1P15863 534 aa11.27□□□□□ -0.6
SNCA-204ENST00000394989 GNB1P62873 340 aa11.27□□□□□ -0.6
SNCA-204ENST00000394989 MRGPRG-AS1Q2M3A8 158 aa11.27□□□□□ -0.6
SNCA-204ENST00000394989 C10orf55Q5SWW7 151 aa11.27□□□□□ -0.6
SNCA-204ENST00000394989 ETFRF1Q6IPR1 90 aa11.27□□□□□ -0.6
SNCA-204ENST00000394989 OR1L8Q8NGR8 309 aa11.27□□□□□ -0.6
SNCA-204ENST00000394989 OR2T10Q8NGZ9 312 aa11.27□□□□□ -0.6
SNCA-204ENST00000394989 TMEM167AQ8TBQ9 72 aa11.27□□□□□ -0.6
SNCA-204ENST00000394989 TPSG1Q9NRR2 321 aa11.27□□□□□ -0.6
SNCA-204ENST00000394989 RALYQ9UKM9 306 aaKnown RBP11.27□□□□□ -0.6
SNCA-204ENST00000394989 NAV3Q8IVL0 2385 aa11.27□□□□□ -0.61
SNCA-204ENST00000394989 CNN1P51911 297 aaKnown RBP11.27□□□□□ -0.61
SNCA-204ENST00000394989 RNASEH2CQ8TDP1 164 aaKnown RBP11.27□□□□□ -0.61
SNCA-204ENST00000394989 DERL1Q9BUN8 251 aa11.27□□□□□ -0.61
SNCA-204ENST00000394989 COMMD5Q9GZQ3 224 aa11.27□□□□□ -0.61
SNCA-204ENST00000394989 TRAPPC1Q9Y5R8 145 aa11.27□□□□□ -0.61
SNCA-204ENST00000394989 MALRD1Q5VYJ5 2156 aa11.27□□□□□ -0.61
SNCA-204ENST00000394989 FOXH1O75593 365 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 LY6HO94772 140 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 USF1P22415 310 aaPredicted RBP11.26□□□□□ -0.61
SNCA-204ENST00000394989 WT1-ASQ06250 92 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 SLC45A2Q9UMX9 530 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 WASHC3Q9Y3C0 194 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 CXorf1O96002 111 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 TMEM144Q7Z5S9 345 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 ZNF430Q9H8G1 570 aaPredicted RBP11.26□□□□□ -0.61
SNCA-204ENST00000394989 KCNIP2Q9NS61 270 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 IGHV3-72A0A0B4J1Y9 119 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 IGLV1-47P01700 117 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 GATA2P23769 480 aaPredicted RBP11.26□□□□□ -0.61
SNCA-204ENST00000394989 CTDSP1Q9GZU7 261 aa11.26□□□□□ -0.61
SNCA-204ENST00000394989 IGHV2-26A0A0B4J1V2 119 aa11.25□□□□□ -0.61
SNCA-204ENST00000394989 SPINK4O60575 86 aa11.25□□□□□ -0.61
SNCA-204ENST00000394989 RAB4AP20338 218 aa11.25□□□□□ -0.61
SNCA-204ENST00000394989 YTHDF2Q9Y5A9 579 aaKnown RBP11.25□□□□□ -0.61
SNCA-204ENST00000394989 INS-IGF2F8WCM5 200 aa11.25□□□□□ -0.61
SNCA-204ENST00000394989 PDE6DO43924 150 aa11.25□□□□□ -0.61
SNCA-204ENST00000394989 PPOXP50336 477 aa11.25□□□□□ -0.61
SNCA-204ENST00000394989 ERASQ7Z444 233 aa11.25□□□□□ -0.61
SNCA-204ENST00000394989 LPAR2Q9HBW0 351 aa11.25□□□□□ -0.61
SNCA-204ENST00000394989 PLXNB1O43157 2135 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 SLC25A17O43808 307 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 NDUFB4O95168 129 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 FSTL3O95633 263 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 CDKN1AP38936 164 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 ATP5IP56385 69 aaPredicted RBP11.24□□□□□ -0.61
SNCA-204ENST00000394989 CD69Q07108 199 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 RAB31Q13636 194 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 OR4A5Q8NH83 315 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 RHOBP62745 196 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 RNF151Q2KHN1 245 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 C1orf194Q5T5A4 169 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 MIR17HGQ75NE6 70 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 VSTM2AQ8TAG5 236 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 COL6A6A6NMZ7 2263 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 TRBV20OR9-2A0A075B6H5 130 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 GCHFRP30047 84 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 DNLZQ5SXM8 178 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 GBGT1Q8N5D6 347 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 OR2T6Q8NHC8 308 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 DNAJC4Q9NNZ3 241 aa11.24□□□□□ -0.61
SNCA-204ENST00000394989 ACTL6BO94805 426 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 C1QTNF9P0C862 333 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 MMDQ15546 238 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 HLA-DRB5Q30154 266 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 ZNF114Q8NC26 417 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 VENTXO95231 258 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 IL3RAP26951 378 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 CNTFRP26992 372 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 OR10J1P30954 320 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 MC5RP33032 325 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 SSBP2P81877 361 aaPredicted RBP11.23□□□□□ -0.61
SNCA-204ENST00000394989 LINC01551Q86U37 167 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 OR4P4Q8NGL7 312 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 HSPB9Q9BQS6 159 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 FNDC4Q9H6D8 234 aaPredicted RBP11.23□□□□□ -0.61
SNCA-204ENST00000394989 VPS13CQ709C8 3753 aa11.23□□□□□ -0.61
SNCA-204ENST00000394989 ERHP84090 104 aaKnown RBP11.22□□□□□ -0.61
SNCA-204ENST00000394989 PPIAL4CA0A0B4J2A2 164 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 SCO2A0A1W2PP80 73 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 A0A1W2PPI3 338 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 DLL1O00548 723 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 PPIAL4GP0DN37 164 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 S100A7P31151 101 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 TNFRSF14Q92956 283 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 ZNF503Q96F45 646 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 BUB1B-PAK6H3BSN5 160 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 ENSAO43768 121 aaKnown RBP11.22□□□□□ -0.61
SNCA-204ENST00000394989 BRS3P32247 399 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 KRTDAPP60985 99 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 LY6DQ14210 128 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 SAMD10Q9BYL1 202 aa11.22□□□□□ -0.61
SNCA-204ENST00000394989 A0A1W2PN81 502 aa11.21□□□□□ -0.61
SNCA-204ENST00000394989 F2Z2F3 143 aa11.21□□□□□ -0.61
SNCA-204ENST00000394989 F6UZH7 168 aa11.21□□□□□ -0.61
SNCA-204ENST00000394989 C11orf71Q6IPW1 123 aa11.21□□□□□ -0.61
SNCA-204ENST00000394989 CMTM2Q8TAZ6 248 aa11.21□□□□□ -0.61
SNCA-204ENST00000394989 ACY3Q96HD9 319 aa11.21□□□□□ -0.61
SNCA-204ENST00000394989 IGHV3-48P01763 117 aa11.21□□□□□ -0.62
SNCA-204ENST00000394989 REG1AP05451 166 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms