RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 FAM214BQ7L5A3 538 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 LY96Q9Y6Y9 160 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 ARAP2Q8WZ64 1704 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 COL2A1P02458 1487 aaPredicted RBP7.41□□□□□ -1.22
LIG3-202ENST00000378526 NCOA6Q14686 2063 aaPredicted RBP7.41□□□□□ -1.22
LIG3-202ENST00000378526 IGKV1D-42A0A075B6H8 117 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 INS-IGF2F8WCM5 200 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 EREGO14944 169 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 INSP01308 110 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 KLRD1Q13241 179 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 OR11H6Q8NGC7 330 aa7.41□□□□□ -1.22
LIG3-202ENST00000378526 RGPD3A6NKT7 1758 aaPredicted RBP7.41□□□□□ -1.22
LIG3-202ENST00000378526 LIMS2Q7Z4I7 341 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 CRYBA4P53673 196 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 EGR4Q05215 589 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 HCP5Q6MZN7 132 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 DUX3Q96PT4 197 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 SSC5DA1L4H1 1573 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 TANC2Q9HCD6 1990 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 IGHV3OR16-12A0A075B7B8 117 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 RNF115Q9Y4L5 304 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 IGKV3D-20A0A0C4DH25 116 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 WNT2P09544 360 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 SCTP09683 121 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 NBL1P41271 181 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 HAMPP81172 84 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 SLC25A39Q9BZJ4 359 aaPredicted RBP7.4□□□□□ -1.22
LIG3-202ENST00000378526 SCN7AQ01118 1682 aa7.4□□□□□ -1.22
LIG3-202ENST00000378526 PEMTQ9UBM1 199 aa7.4□□□□□ -1.23
LIG3-202ENST00000378526 C3orf79P0CE67 100 aa7.4□□□□□ -1.23
LIG3-202ENST00000378526 ATG4DQ86TL0 474 aaPredicted RBP7.4□□□□□ -1.23
LIG3-202ENST00000378526 GPBAR1Q8TDU6 330 aa7.4□□□□□ -1.23
LIG3-202ENST00000378526 SLC50A1Q9BRV3 221 aa7.4□□□□□ -1.23
LIG3-202ENST00000378526 TIMM21Q9BVV7 248 aa7.4□□□□□ -1.23
LIG3-202ENST00000378526 JPT1Q9UK76 154 aa7.4□□□□□ -1.23
LIG3-202ENST00000378526 FRMPD3Q5JV73 1810 aa7.4□□□□□ -1.23
LIG3-202ENST00000378526 DLEC1Q9Y238 1755 aa7.4□□□□□ -1.23
LIG3-202ENST00000378526 OBSL1O75147 1896 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 LIPT2A6NK58 231 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 SEC61GP60059 68 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 MSRB3Q8IXL7 192 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 SHISA5Q8N114 240 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 TOPAZ1Q8N9V7 1692 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 CD27P26842 260 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 ATP5EP56381 51 aaPredicted RBP7.39□□□□□ -1.23
LIG3-202ENST00000378526 SLC25A53Q5H9E4 307 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 CEND1Q8N111 149 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 WFDC9Q8NEX5 89 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 VGLL1Q99990 258 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 CXCL1P09341 107 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 MP68P56378 58 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 C8orf82Q6P1X6 216 aaPredicted RBP7.39□□□□□ -1.23
LIG3-202ENST00000378526 PRO1854Q9UHT4 67 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 SF3B6Q9Y3B4 125 aaKnown RBP7.39□□□□□ -1.23
LIG3-202ENST00000378526 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.39□□□□□ -1.238e-8■■■■■ 63.4
LIG3-202ENST00000378526 ZNF625Q96I27 306 aaPredicted RBP7.39□□□□□ -1.23
LIG3-202ENST00000378526 TCF15Q12870 199 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 MPV17P39210 176 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 CRIM1Q9NZV1 1036 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 MED13LQ71F56 2210 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 SIPA1L3O60292 1781 aaPredicted RBP7.39□□□□□ -1.23
LIG3-202ENST00000378526 LILRA5A6NI73 299 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 ZIC3O60481 467 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 IL11RAQ14626 422 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 IFI27L2Q9H2X8 130 aa7.39□□□□□ -1.23
LIG3-202ENST00000378526 TRAV13-2A0A0B4J235 113 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 RNASE4P34096 147 aaKnown RBP7.38□□□□□ -1.23
LIG3-202ENST00000378526 Q0VG73 95 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 Q5BKY6 102 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 TRAV17A0A0B4J275 112 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 CD3EP07766 207 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 FGF6P10767 208 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 HAPLN4Q86UW8 402 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 THAP10Q9P2Z0 257 aaPredicted RBP7.38□□□□□ -1.23
LIG3-202ENST00000378526 COX8AP10176 69 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 POLR3KQ9Y2Y1 108 aaPredicted RBP7.38□□□□□ -1.23
LIG3-202ENST00000378526 VCYO14598 125 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 EGR1P18146 543 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 COL9A1P20849 921 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 LILRA3Q8N6C8 439 aaPredicted RBP7.38□□□□□ -1.23
LIG3-202ENST00000378526 SHISA7A6NL88 538 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 GFRALQ6UXV0 394 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 CALYQ9NYX4 217 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.38□□□□□ -1.23
LIG3-202ENST00000378526 ZXDCQ2QGD7 858 aaPredicted RBP7.38□□□□□ -1.23
LIG3-202ENST00000378526 PDFQ9HBH1 243 aa7.38□□□□□ -1.23
LIG3-202ENST00000378526 LOC285556D6RIA3 1793 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 SHISA9B4DS77 424 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 CD69Q07108 199 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 NPIPB3Q92617 1050 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 SBF2Q86WG5 1849 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 TRGV11A0A075B6L2 103 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 D6R8Y8 96 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 CDKN1AP38936 164 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 CCL14Q16627 93 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 MUSTN1Q8IVN3 82 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 CFHR5Q9BXR6 569 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 A0A1B0GX51 115 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 TCRBV5S1A1TA0A578 114 aa7.37□□□□□ -1.23
LIG3-202ENST00000378526 TMEM229AB2RXF0 380 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms