RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SELENOVP59797 346 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 COX19Q49B96 90 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 PIP4P1Q86T03 277 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 OR2T6Q8NHC8 308 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 SLC25A33Q9BSK2 321 aa18.22■□□□□ 0.51
TRIM28-202ENST00000341753 C8orf88P0DMB2 117 aa18.21■□□□□ 0.51
TRIM28-202ENST00000341753 IGLL1P15814 213 aa18.21■□□□□ 0.51
TRIM28-202ENST00000341753 CD24P25063 80 aa18.21■□□□□ 0.51
TRIM28-202ENST00000341753 TAS2R45P59539 299 aa18.21■□□□□ 0.51
TRIM28-202ENST00000341753 NUP35Q8NFH5 326 aa18.21■□□□□ 0.51
TRIM28-202ENST00000341753 ORAOV1Q8WV07 137 aa18.21■□□□□ 0.51
TRIM28-202ENST00000341753 IGHV2OR16-5A0A0B4J2B6 119 aa18.21■□□□□ 0.5
TRIM28-202ENST00000341753 M0QZ24 198 aa18.21■□□□□ 0.5
TRIM28-202ENST00000341753 RND1Q92730 232 aa18.21■□□□□ 0.5
TRIM28-202ENST00000341753 SLC25A2Q9BXI2 301 aa18.21■□□□□ 0.5
TRIM28-202ENST00000341753 ARL2-SNX15V9GYD0 113 aa18.21■□□□□ 0.5
TRIM28-202ENST00000341753 LHFPL4Q7Z7J7 247 aa18.2■□□□□ 0.5
TRIM28-202ENST00000341753 SNRNP40Q96DI7 357 aaKnown RBP18.2■□□□□ 0.5
TRIM28-202ENST00000341753 LEMD1Q68G75 181 aa18.2■□□□□ 0.5
TRIM28-202ENST00000341753 VHLLQ6RSH7 139 aa18.2■□□□□ 0.5
TRIM28-202ENST00000341753 DEFB108BQ8NET1 73 aa18.2■□□□□ 0.5
TRIM28-202ENST00000341753 PPP1R35Q8TAP8 253 aa18.2■□□□□ 0.5
TRIM28-202ENST00000341753 OR2V2Q96R30 315 aa18.2■□□□□ 0.5
TRIM28-202ENST00000341753 YLPM1P49750 1951 aaKnown RBP18.19■□□□□ 0.5
TRIM28-202ENST00000341753 IGHV1-18A0A0C4DH31 117 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 A0A1W2PRE2 83 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 PLAUP00749 431 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 IGHG3P01860 377 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 TNFRSF19Q9NS68 423 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 BET1LQ9NYM9 111 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 COX11Q9Y6N1 276 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 TEX50A0A1B0GTY4 177 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 SPRY3O43610 288 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 REG1AP05451 166 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 GNG5P63218 68 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 PRCDQ00LT1 54 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 NUDT10Q8NFP7 164 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 NUDT11Q96G61 164 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 FAM167A-AS1Q96KT0 104 aa18.19■□□□□ 0.5
TRIM28-202ENST00000341753 AMMECR1Q9Y4X0 333 aaPredicted RBP18.19■□□□□ 0.5
TRIM28-202ENST00000341753 ZNF292O60281 2723 aa18.18■□□□□ 0.5
TRIM28-202ENST00000341753 TRAV9-2A0A087WT02 112 aa18.18■□□□□ 0.5
TRIM28-202ENST00000341753 MRPL27Q9P0M9 148 aaKnown RBP18.18■□□□□ 0.5
TRIM28-202ENST00000341753 PRNDQ9UKY0 176 aa18.18■□□□□ 0.5
TRIM28-202ENST00000341753 IGHV2-26A0A0B4J1V2 119 aa18.17■□□□□ 0.5
TRIM28-202ENST00000341753 NKX6-3A6NJ46 265 aa18.17■□□□□ 0.5
TRIM28-202ENST00000341753 RBX1P62877 108 aa18.17■□□□□ 0.5
TRIM28-202ENST00000341753 CR1LQ2VPA4 569 aa18.17■□□□□ 0.5
TRIM28-202ENST00000341753 UPK2O00526 184 aa18.17■□□□□ 0.5
TRIM28-202ENST00000341753 UBE2G1P62253 170 aa18.17■□□□□ 0.5
TRIM28-202ENST00000341753 GUSBP1Q15486 140 aa18.17■□□□□ 0.5
TRIM28-202ENST00000341753 RPH3ALQ9UNE2 315 aa18.17■□□□□ 0.5
TRIM28-202ENST00000341753 DSCAMO60469 2012 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 VWC2LB2RUY7 222 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 UBE2V1Q13404 147 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 ZNF738Q8NE65 137 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 OR8B2Q96RD0 313 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 MRPS16Q9Y3D3 137 aaKnown RBP18.16■□□□□ 0.5
TRIM28-202ENST00000341753 DMXL2Q8TDJ6 3036 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 HIGD1CA8MV81 97 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 CGB3P0DN86 165 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 CGB7P0DN87 165 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 RNASE2P10153 161 aaKnown RBP18.16■□□□□ 0.5
TRIM28-202ENST00000341753 FOXA3P55318 350 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-202ENST00000341753 TBR1Q16650 682 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 RPRMLQ8N4K4 120 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 OR2D3Q8NGH3 330 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 ALKBH7Q9BT30 221 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-202ENST00000341753 COMMD5Q9GZQ3 224 aa18.16■□□□□ 0.5
TRIM28-202ENST00000341753 KBTBD11-OT1A0A1B0GTJ5 212 aa18.15■□□□□ 0.5
TRIM28-202ENST00000341753 OR4F17Q8NGA8 305 aa18.15■□□□□ 0.5
TRIM28-202ENST00000341753 MBD6Q96DN6 1003 aa18.15■□□□□ 0.5
TRIM28-202ENST00000341753 C2orf70A6NJV1 201 aa18.15■□□□□ 0.5
TRIM28-202ENST00000341753 CEACAM8P31997 349 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-202ENST00000341753 KLF3P57682 345 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-202ENST00000341753 MBNL2Q5VZF2 373 aaKnown RBP18.15■□□□□ 0.5
TRIM28-202ENST00000341753 OR8B3Q8NGG8 313 aa18.15■□□□□ 0.5
TRIM28-202ENST00000341753 LOC105371242A0A075B767 164 aa18.14■□□□□ 0.5
TRIM28-202ENST00000341753 SAA1P0DJI8 122 aaPredicted RBP18.14■□□□□ 0.5
TRIM28-202ENST00000341753 CT45A6P0DMU7 189 aa18.14■□□□□ 0.5
TRIM28-202ENST00000341753 CT45A5P0DMU8 189 aa18.14■□□□□ 0.5
TRIM28-202ENST00000341753 CT45A7P0DMV0 189 aa18.14■□□□□ 0.5
TRIM28-202ENST00000341753 ZNF841Q6ZN19 808 aa18.14■□□□□ 0.5
TRIM28-202ENST00000341753 LINC00173Q6ZV60 143 aa18.14■□□□□ 0.5
TRIM28-202ENST00000341753 TCF24Q7RTU0 167 aa18.14■□□□□ 0.5
TRIM28-202ENST00000341753 ITLN1Q8WWA0 313 aa18.14■□□□□ 0.5
TRIM28-202ENST00000341753 E7EUB6 86 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 FNDC10F2Z333 226 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 CD69Q07108 199 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 SAP30LQ9HAJ7 183 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 TRAV17A0A0B4J275 112 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 PEX7O00628 323 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 ZNF329Q86UD4 541 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 GRAMD2BQ96HH9 432 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 URB1-AS1Q96HZ7 61 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 DKK4Q9UBT3 224 aa18.14■□□□□ 0.49
TRIM28-202ENST00000341753 H0YJW9 148 aa18.13■□□□□ 0.49
TRIM28-202ENST00000341753 PAXXQ9BUH6 204 aa18.13■□□□□ 0.49
TRIM28-202ENST00000341753 IGLC7A0M8Q6 106 aa18.13■□□□□ 0.49
TRIM28-202ENST00000341753 COX7A2P2O60397 106 aa18.13■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms