RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 PRR20DP86480 221 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 PRR20BP86481 221 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 PRR20AP86496 221 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 UNQ5815/PRO19632Q6UWF5 114 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 SLC35E3Q7Z769 313 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 SIGLECL1Q8N7X8 197 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 ZNF709Q8N972 641 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 OR4X1Q8NH49 305 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 LYPD6BQ8NI32 183 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 MISP3Q96FF7 219 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 THYN1Q9P016 225 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 SLC45A2Q9UMX9 530 aa11.71□□□□□ -0.53
CCDC88C-202ENST00000334448 LINC01548A6NM66 108 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 AGPAT2O15120 278 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 BLCAPP62952 87 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 MLANAQ16655 118 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 AKR1C8PQ5T2L2 129 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 TMEM182Q6ZP80 229 aaPredicted RBP11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 IL17RELQ6ZVW7 336 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 Q8N2B8 174 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 OR2T6Q8NHC8 308 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 ATP6V0BQ99437 205 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 MRPL36Q9P0J6 103 aaKnown RBP11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 CDC42EP3Q9UKI2 254 aa11.7□□□□□ -0.54
CCDC88C-202ENST00000334448 SONP18583 2426 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 IGKV1D-37A0A075B6S9 117 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 SH2D7A6NKC9 451 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 ZNF705EA8MWA4 302 aaPredicted RBP11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 LY6G6DO95868 133 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 PPIFP30405 207 aaKnown RBP11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 RND2P52198 227 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 SELENOTP62341 195 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 CFHR3Q02985 330 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 ECSCRQ19T08 205 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 TMEM41BQ5BJD5 291 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 ACSM6Q6P461 480 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 VN1R17PQ8TDU5 208 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 TRGV9Q99603 122 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 NPFFR1Q9GZQ6 430 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 RFNGQ9Y644 331 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 BAHCC1Q9P281 2608 aa11.69□□□□□ -0.54
CCDC88C-202ENST00000334448 TRAV1-1A0A0B4J248 108 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 G3V318 75 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 TSPAN15O95858 294 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 RPL15P61313 204 aaKnown RBP11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 PXDC1Q5TGL8 231 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 NECAP1Q8NC96 275 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 OR5T1Q8NG75 326 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 NPIPB3Q92617 1050 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 ACY3Q96HD9 319 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 TXN2Q99757 166 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 RPRMQ9NS64 109 aa11.68□□□□□ -0.54
CCDC88C-202ENST00000334448 TCRBV4S1A1TA0A5B7 111 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 TMEM89A2RUT3 159 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 NUDT19A8MXV4 375 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 SEC14L6B5MCN3 397 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 CLN5O75503 358 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 YIF1AO95070 293 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 LINC00869P0C866 280 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 IGLC1P0CG04 106 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 CD99P14209 185 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 M6PRP20645 277 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 OR10J1P30954 320 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 FFAR4Q5NUL3 377 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 RBMS3Q6XE24 437 aaKnown RBP11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 Q6ZRG5 221 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 CYP2G1PQ6ZSU1 146 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 STPG3Q8N7X2 389 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 MBD3L1Q8WWY6 194 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 PRSS22Q9GZN4 317 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 SLC39A9Q9NUM3 307 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 PXMP4Q9Y6I8 212 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 HIVEP2P31629 2446 aa11.67□□□□□ -0.54
CCDC88C-202ENST00000334448 FAM223BA6NKX1 122 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 IGLV1-40P01703 118 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 PRH1P02810 166 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 NPBWR1P48145 328 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 B2MP61769 119 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 ACOT6Q3I5F7 207 aaPredicted RBP11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 Q6ZS46 218 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 FAM223AQ8IWN6 122 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 RPP25LQ8N5L8 163 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 FAM213BQ8TBF2 198 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 PCNPQ8WW12 178 aaKnown RBP11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 CXorf58Q96LI9 332 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 C19orf24Q9BVV8 132 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 ZNF702PQ9H963 129 aa11.66□□□□□ -0.54
CCDC88C-202ENST00000334448 TRAV30A0A087WSZ9 112 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 DNAJC9-AS1A6NH13 148 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 F8W735 103 aaPredicted RBP11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 NDUFB8O95169 186 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 SRD5A1P18405 259 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 FHITP49789 147 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 MFAP4P55083 255 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 ELLP55199 621 aaPredicted RBP11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 RAB2AP61019 212 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 C9orf152Q5JTZ5 239 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 MIC13Q5XKP0 118 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 IL34Q6ZMJ4 242 aa11.65□□□□□ -0.54
CCDC88C-202ENST00000334448 EIF4E3Q8N5X7 224 aaKnown RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms