RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 SPANXN5Q5MJ07 72 aa8.01□□□□□ -1.13
HMGB3-201ENST00000325307 C10orf55Q5SWW7 151 aa8.01□□□□□ -1.13
HMGB3-201ENST00000325307 OR1L8Q8NGR8 309 aa8.01□□□□□ -1.13
HMGB3-201ENST00000325307 MEGF9Q9H1U4 602 aa8.01□□□□□ -1.13
HMGB3-201ENST00000325307 PLEKHA3Q9HB20 300 aa8.01□□□□□ -1.13
HMGB3-201ENST00000325307 PARP11Q9NR21 331 aa8.01□□□□□ -1.13
HMGB3-201ENST00000325307 C1RLQ9NZP8 487 aa8.01□□□□□ -1.13
HMGB3-201ENST00000325307 TET2Q6N021 2002 aaPredicted RBP8.01□□□□□ -1.13
HMGB3-201ENST00000325307 FHITP49789 147 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 THNSL2Q86YJ6 484 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 TEX29Q8N6K0 151 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 HIPK2Q9H2X6 1198 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 TMEM231Q9H6L2 316 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 TEX50A0A1B0GTY4 177 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 A8MWP6 167 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 IL6RP08887 468 aaPredicted RBP8□□□□□ -1.13
HMGB3-201ENST00000325307 TMEM252Q8N6L7 170 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 OR5B3Q8NH48 314 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 ABHD5Q8WTS1 349 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 CIB3Q96Q77 187 aaPredicted RBP8□□□□□ -1.13
HMGB3-201ENST00000325307 CSTL1Q9H114 145 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 TNFRSF19Q9NS68 423 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 TSTD3H0UI37 97 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 K7EP13 123 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 FCN1O00602 326 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 EBI3Q14213 229 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 RHEBQ15382 184 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 USF2Q15853 346 aaPredicted RBP8□□□□□ -1.13
HMGB3-201ENST00000325307 C5orf64Q2M2E5 130 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 NPBQ8NG41 125 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 OR52E5Q8NH55 327 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 HRH4Q9H3N8 390 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 ZNF257Q9Y2Q1 563 aa8□□□□□ -1.13
HMGB3-201ENST00000325307 CA2P00918 260 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 TMEM267Q0VDI3 215 aaPredicted RBP7.99□□□□□ -1.13
HMGB3-201ENST00000325307 SMR3AQ99954 134 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 RASL11BQ9BPW5 248 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 WSB1Q9Y6I7 421 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 NAV3Q8IVL0 2385 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 FSHBP01225 129 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 APELAP0DMC3 54 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 RPL27AP46776 148 aaKnown RBP7.99□□□□□ -1.13
HMGB3-201ENST00000325307 KRTAP1-1Q07627 177 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 Q6ZRG5 221 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 Q8N6K4 173 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 TMEM217Q8N7C4 229 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 OR5R1Q8NH85 324 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 SLC25A33Q9BSK2 321 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 SLC25A31Q9H0C2 315 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 PLXNB1O43157 2135 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 C7orf77A4D0Y5 90 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 CST7O76096 145 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 NDUFA3O95167 84 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 CRYGBP07316 175 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 SEC11BP0C7V7 166 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 DYNLT3P51808 116 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 FGF8P55075 233 aaPredicted RBP7.99□□□□□ -1.13
HMGB3-201ENST00000325307 PRCDQ00LT1 54 aa7.99□□□□□ -1.13
HMGB3-201ENST00000325307 STRAPQ9Y3F4 350 aaKnown RBP7.99□□□□□ -1.13
HMGB3-201ENST00000325307 AKAP9Q99996 3911 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 SOX15O60248 233 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 CLINT1Q14677 625 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 AWAT1Q58HT5 328 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 HSD17B11Q8NBQ5 300 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 OR10W1Q8NGF6 305 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 NUDT11Q96G61 164 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 ZNF469Q96JG9 3925 aaPredicted RBP7.98□□□□□ -1.13
HMGB3-201ENST00000325307 IGHV4-59P01825 116 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 METTL15P1P0C7V9 234 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 SNCAP37840 140 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 COMMD1Q8N668 190 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 PIFOQ8TCI5 191 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 PITPNC1Q9UKF7 332 aa7.98□□□□□ -1.13
HMGB3-201ENST00000325307 A0A1B0GW64 132 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 E7EUB6 86 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 COMPP49747 757 aaPredicted RBP7.97□□□□□ -1.13
HMGB3-201ENST00000325307 TAS2R30P59541 319 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 EIF5AP63241 154 aaKnown RBP7.97□□□□□ -1.13
HMGB3-201ENST00000325307 GAMTQ14353 236 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 FXYD3Q14802 87 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 OR8G2PQ6IF36 304 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 HAPLN4Q86UW8 402 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 OR5C1Q8NGR4 320 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 SNHG12Q9BXW3 62 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 NDUFA4L2Q9NRX3 87 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 MOB4Q9Y3A3 225 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 SH2D7A6NKC9 451 aaPredicted RBP7.97□□□□□ -1.13
HMGB3-201ENST00000325307 OR13C7P0DN81 318 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 ERHP84090 104 aaKnown RBP7.97□□□□□ -1.13
HMGB3-201ENST00000325307 ARL16Q0P5N6 197 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 Q8N9W7 124 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 SRSF12Q8WXF0 261 aaKnown RBP7.97□□□□□ -1.13
HMGB3-201ENST00000325307 GAR1Q9NY12 217 aaKnown RBP7.97□□□□□ -1.13
HMGB3-201ENST00000325307 REG1AP05451 166 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 NBEAP1P0C6P0 100 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 VDAC2P45880 294 aaPredicted RBP7.97□□□□□ -1.13
HMGB3-201ENST00000325307 PTTG1IPP53801 180 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 MRGPRG-AS1Q2M3A8 158 aa7.97□□□□□ -1.13
HMGB3-201ENST00000325307 MRPL41Q8IXM3 137 aaKnown RBP7.97□□□□□ -1.13
HMGB3-201ENST00000325307 RCC1LQ96I51 464 aaKnown RBP7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms