RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 IGKV1D-42A0A075B6H8 117 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 TRGV8A0A0C4DH27 118 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 RASL11AQ6T310 242 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 PILRBQ9UKJ0 227 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 UBR3Q6ZT12 1888 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 A0A0G2JK05 382 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 K7ERJ3 54 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 ARPC1AQ92747 370 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 ZXDCQ2QGD7 858 aaPredicted RBP9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 DDB2Q92466 427 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 RNF7Q9UBF6 113 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 NPIPB11E5RHQ5 1161 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 NAPSAO96009 420 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 THADAQ6YHU6 1953 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 IGHV3-23P01764 117 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 PF4V1P10720 104 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 DTX4Q9Y2E6 619 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 H0YIZ8 118 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 FCN3O75636 299 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 TIMP3P35625 211 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 PTCRAQ6ISU1 281 aaPredicted RBP9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 UNQ9370/PRO34162Q6UXP9 181 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 CCL13Q99616 98 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 PRB1P04280 392 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 ETDBQ3ZM63 59 aa9.95□□□□□ -0.82
SHROOM3-201ENST00000296043 TRBV24-1A0A075B6N3 115 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 BTAF1O14981 1849 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 IGHV5-51A0A0C4DH38 117 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 IGKV1D-16P01601 117 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 ZIC1Q15915 447 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 ZNF826PQ6ZT77 177 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 CIARTQ8N365 385 aaPredicted RBP9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 TEX45Q8NA69 505 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 HOXC4P09017 264 aaPredicted RBP9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 ADCYAP1P18509 176 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 MPZP25189 248 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 ZFP36L2P47974 494 aaKnown RBP9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 ZNF146Q15072 292 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 DRAM1Q8N682 238 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 CD55P08174 381 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 ADAMTSL1Q8N6G6 1762 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 C18orf12Q96KH6 178 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 C20orf144Q9BQM9 153 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 FAM117AQ9C073 453 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 LAGE3Q14657 143 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 SPINT1O43278 529 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 PMVKQ15126 192 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 ANXA2RQ3ZCQ2 193 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 CFAP161Q6P656 301 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 VSIRQ9H7M9 311 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 NBEAP1P0C6P0 100 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 SPINK14Q6IE38 97 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 LAMTOR3Q9UHA4 124 aa9.94□□□□□ -0.82
SHROOM3-201ENST00000296043 PRR32B1ATL7 298 aa9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 EGR4Q05215 589 aa9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 LHFPL6Q9Y693 200 aa9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 MRPL23Q16540 153 aaKnown RBP9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 C9orf50Q5SZB4 431 aa9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 Q6AWC8 147 aa9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 hCG_38984A0A1B0GV85 526 aa9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 FAM90A27PA6NNH2 459 aa9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 ZNF658BQ4V348 819 aaPredicted RBP9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 TMEM242Q9NWH2 141 aa9.93□□□□□ -0.82
SHROOM3-201ENST00000296043 SRSF1Q07955 248 aaKnown RBP eCLIP9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 DEFB104AQ8WTQ1 72 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 TOMM40O96008 361 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 STPG4Q8N801 248 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 PLXNA3P51805 1871 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 IGHV3OR16-8A0A075B7F1 116 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 GFRALQ6UXV0 394 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 TSKUQ8WUA8 353 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 OSTCQ9NRP0 149 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 STRCP1A6NGW2 1772 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 NGFRP08138 427 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 CD28P10747 220 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 WNT9BO14905 357 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 RBM3P98179 157 aaKnown RBP9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 Q8NFD4 153 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 H7C1H1 209 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 ZP4Q12836 540 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 FAM159AQ6UWV7 190 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 Q6ZVH6 145 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 GGTLC1Q9BX51 225 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 C1QTNF4Q9BXJ3 329 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 ZNF138P52744 262 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 PMS2CLQ68D20 193 aa9.92□□□□□ -0.82
SHROOM3-201ENST00000296043 CELA2BP08218 269 aaPredicted RBP9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 CSPG4Q6UVK1 2322 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 LILRA5A6NI73 299 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 TCF15Q12870 199 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 ZNF296Q8WUU4 475 aaPredicted RBP9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 FAM208BQ5VWN6 2430 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 PRSS53Q2L4Q9 553 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 FBXL7Q9UJT9 491 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 VWC2LB2RUY7 222 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 CSTL1Q9H114 145 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 RS1O15537 224 aa9.91□□□□□ -0.82
SHROOM3-201ENST00000296043 CRPP02741 224 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms