RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 EEF1AKMT3Q96AZ1 226 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 UBE2CO00762 179 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 CGAP01215 116 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 SRXN1Q9BYN0 137 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 BDP1A6H8Y1 2624 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 TRAV14DV4A0A0A6YYC5 116 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 TRAV24A0A0B4J272 114 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 DNM1P46Q6ZS02 220 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 RTBDNQ9BSG5 229 aaPredicted RBP8.34□□□□□ -1.07
COL6A3-201ENST00000295550 MS4A5Q9H3V2 200 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 NPIPB11E5RHQ5 1161 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 CELA2AP08217 269 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 CITED1Q99966 193 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 RNF222A6NCQ9 220 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 COX5BP10606 129 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 CYP2G1PQ6ZSU1 146 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 PRR32B1ATL7 298 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 LY6G6FQ5SQ64 297 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 ST20Q9HBF5 79 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 PPIAL4EA0A075B759 164 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 TRAV5A0A0B4J249 113 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 GHRHP01286 108 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 PPIAL4FP0DN26 164 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 FOXL2P58012 376 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 SEMA5BQ9P283 1151 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 PPIAL4AQ9Y536 164 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 ATRAIDQ6UW56 229 aa8.34□□□□□ -1.07
COL6A3-201ENST00000295550 CHCHD2Q9Y6H1 151 aaPredicted RBP8.34□□□□□ -1.07
COL6A3-201ENST00000295550 ZIC3O60481 467 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 ICAM4Q14773 271 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 E9PQ18 207 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 CLEC7AQ9BXN2 247 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 IL6RP08887 468 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-201ENST00000295550 CD69Q07108 199 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 ORAOV1Q8WV07 137 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 EGR1P18146 543 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 TMEM42Q69YG0 159 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 KBTBD11-OT1A0A1B0GTJ5 212 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 ATXN7O15265 892 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-201ENST00000295550 CCL1P22362 96 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 NRN1LQ496H8 165 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 MAFAQ8NHW3 353 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-201ENST00000295550 ZNF479Q96JC4 524 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 IDI2-AS1Q9NZ38 188 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 SRP19P09132 144 aaKnown RBP8.33□□□□□ -1.08
COL6A3-201ENST00000295550 ADMP35318 185 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 ATP5IP56385 69 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-201ENST00000295550 PCOLCEQ15113 449 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 TPTE2P1Q5T6R2 138 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 EDA2RQ9HAV5 297 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 A0A0G2JLM5 398 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 NPPCP23582 126 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 ZNF826PQ6ZT77 177 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 SHISA5Q8N114 240 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 TMEM170AQ8WVE7 144 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 C2CD3Q4AC94 2353 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 J3QW42 95 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 M0R2P5 195 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 HSD52Q0P140 79 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 PEAR1Q5VY43 1037 aaPredicted RBP8.33□□□□□ -1.08
COL6A3-201ENST00000295550 GTSF1LQ9H1H1 148 aa8.33□□□□□ -1.08
COL6A3-201ENST00000295550 NOTCH4Q99466 2003 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 DUX3Q96PT4 197 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 KIAA1671Q9BY89 1806 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 TDGF1P13385 188 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 SAP25Q8TEE9 199 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 GDF15Q99988 308 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 EXPH5Q8NEV8 1989 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 F8VVB4 439 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 F8VWA3 439 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 UCP2P55851 309 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 ITLN1Q8WWA0 313 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 SEPSECSQ9HD40 501 aaKnown RBP8.32□□□□□ -1.08
COL6A3-201ENST00000295550 A0A1W2PR77 199 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 PTGDSP41222 190 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 FER1L6-AS1Q8NA97 138 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 JMJD8Q96S16 334 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 A0A087WV48 116 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 TRAV2A0A0B4J234 112 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 COQ2Q96H96 371 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 TNFRSF6BO95407 300 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 CLEC2AQ6UVW9 174 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 PCSK4Q6UW60 755 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 PNKDQ8N490 385 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 IGHV3OR16-13A0A075B7E8 117 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 IGHV3-74A0A0B4J1X5 117 aa8.32□□□□□ -1.08
COL6A3-201ENST00000295550 ZNF48Q96MX3 618 aaPredicted RBP8.32□□□□□ -1.08
COL6A3-201ENST00000295550 ABCA2Q9BZC7 2435 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 IGLV3-32A0A0A0MS00 114 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 LGALS1P09382 135 aaKnown RBP8.31□□□□□ -1.08
COL6A3-201ENST00000295550 RPL39P5Q59GN2 51 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 PAX1P15863 534 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 TRIP6Q15654 476 aaKnown RBP8.31□□□□□ -1.08
COL6A3-201ENST00000295550 ABHD12Q8N2K0 398 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 OR10W1Q8NGF6 305 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 OR5P3Q8WZ94 311 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 Q9H3A6 140 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 EPDR1Q9UM22 224 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 IGHV3-49A0A0A0MS15 119 aa8.31□□□□□ -1.08
COL6A3-201ENST00000295550 HIST1H4AP62805 103 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms