RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 UNQ5815/PRO19632Q6UWF5 114 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 PPP1R35Q8TAP8 253 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 PLEKHA3Q9HB20 300 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 GGTLC3B5MD39 225 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 F2RL2O00254 374 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 PLAUP00749 431 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 IGLV1-44P01699 117 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 TPTE2P1Q5T6R2 138 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 SEM1Q6ZVN7 128 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 FAM19A2Q8N3H0 131 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 OR5AU1Q8NGC0 362 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 OR52E5Q8NH55 327 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 OR2T6Q8NHC8 308 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 BTF3L4Q96K17 158 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 FBXL7Q9UJT9 491 aa8.2□□□□□ -1.1
LIG3-201ENST00000262327 TRAV34A0A0B4J273 112 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 TRAT1Q6PIZ9 186 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 FAM168AQ92567 244 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 CST9LQ9H4G1 147 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 TMEM14BQ9NUH8 114 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 SLC25A15Q9Y619 301 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 E7EUB6 86 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 APELAP0DMC3 54 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 PRR20EP86478 221 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 PRR20CP86479 221 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 PRR20DP86480 221 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 PRR20BP86481 221 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 PRR20AP86496 221 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 TEX43Q6ZNM6 134 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 ATOH7Q8N100 152 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 ZNF738Q8NE65 137 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 VAMP8Q9BV40 100 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 COX11Q9Y6N1 276 aa8.19□□□□□ -1.1
LIG3-201ENST00000262327 IGHV2-70DA0A0C4DH43 119 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 KBTBD11-OT1A0A1B0GTJ5 212 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 MT-CO2P00403 227 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 NBEAP1P0C6P0 100 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 RANP62826 216 aaKnown RBP8.18□□□□□ -1.1
LIG3-201ENST00000262327 TMEM183BQ1AE95 376 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 TMEM249Q2WGJ8 235 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 C10orf55Q5SWW7 151 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 PLSCR4Q9NRQ2 329 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 SLC35D1Q9NTN3 355 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 ACACAQ13085 2346 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 TRGV10A0A0A0MS01 117 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 PYYP10082 97 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 NTF3P20783 257 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 AMTP48728 403 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 RIPPLY3P57055 190 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 CCL8P80075 99 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 PRB3Q04118 309 aaPredicted RBP8.18□□□□□ -1.1
LIG3-201ENST00000262327 PRR27Q6MZM9 219 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 ZNF474Q6S9Z5 364 aaPredicted RBP8.18□□□□□ -1.1
LIG3-201ENST00000262327 SLC45A2Q9UMX9 530 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 FOXA2Q9Y261 457 aaPredicted RBP8.18□□□□□ -1.1
LIG3-201ENST00000262327 TRGV8A0A0C4DH27 118 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 TEX50A0A1B0GTY4 177 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 CT45A6P0DMU7 189 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 CT45A5P0DMU8 189 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 CT45A7P0DMV0 189 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 SRIP30626 198 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 SIGLECL1Q8N7X8 197 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 NEUROG1Q92886 237 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 WNT10AQ9GZT5 417 aa8.18□□□□□ -1.1
LIG3-201ENST00000262327 TBL2Q9Y4P3 447 aaKnown RBP8.18□□□□□ -1.1
LIG3-201ENST00000262327 AKAP13Q12802 2813 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 FAM90A9PA6NNJ1 464 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 ZNF253O75346 499 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 SAA1P0DJI8 122 aaPredicted RBP8.17□□□□□ -1.1
LIG3-201ENST00000262327 CGB3P0DN86 165 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 CGB7P0DN87 165 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 CCL3L1P16619 93 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 DIAPH2-AS1Q14236 149 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 TIGITQ495A1 244 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 OR2D3Q8NGH3 330 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 RELNP78509 3460 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 TMEM8BA6NDV4 472 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 REG1AP05451 166 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 TNFAIP6P98066 277 aaPredicted RBP8.17□□□□□ -1.1
LIG3-201ENST00000262327 FAM27E3Q08E93 113 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 WFDC8Q8IUA0 241 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 TXNDC17Q9BRA2 123 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 LAMTOR2Q9Y2Q5 125 aa8.17□□□□□ -1.1
LIG3-201ENST00000262327 IGHV3-21A0A0B4J1V1 117 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 MBD3L4A6NDZ8 208 aaPredicted RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 MBD3L3A6NE82 208 aaPredicted RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 MBD3L5A6NJ08 208 aaPredicted RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 H3BTX0 84 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 COMPP49747 757 aaPredicted RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 IBA57Q5T440 356 aaKnown RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 C19orf35Q6ZS72 473 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 C1orf162Q8NEQ5 155 aaPredicted RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 MBD3L2Q8NHZ7 208 aaPredicted RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 C11orf52Q96A22 123 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 TECRQ9NZ01 308 aaKnown RBP8.16□□□□□ -1.1
LIG3-201ENST00000262327 DSCAML1Q8TD84 2053 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 C9JCJ5 164 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 DIRC3C9JPN6 131 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 UPK2O00526 184 aa8.16□□□□□ -1.1
LIG3-201ENST00000262327 LHBP01229 141 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms