RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 FXYD7P58549 80 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 MORN2Q502X0 79 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 KLF14Q8TD94 323 aaPredicted RBP11.76□□□□□ -0.53
SDC1-201ENST00000254351 BOKQ9UMX3 212 aaPredicted RBP11.76□□□□□ -0.53
SDC1-201ENST00000254351 AMMECR1Q9Y4X0 333 aaPredicted RBP11.76□□□□□ -0.53
SDC1-201ENST00000254351 ADAMTS20P59510 1910 aa11.76□□□□□ -0.53
SDC1-201ENST00000254351 INTS1Q8N201 2190 aaKnown RBP11.76□□□□□ -0.53
SDC1-201ENST00000254351 HSBP1L1C9JCN9 74 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 LEPROTL1O95214 131 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 SLC25A34Q6PIV7 304 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 SAP30LQ9HAJ7 183 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 GVINP1Q7Z2Y8 2422 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 CD177Q8N6Q3 437 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 DEFB108BQ8NET1 73 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 CHRDL1Q9BU40 450 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 TNRC6BQ9UPQ9 1833 aaKnown RBP11.75□□□□□ -0.53
SDC1-201ENST00000254351 TNRC6AQ8NDV7 1962 aaKnown RBP11.75□□□□□ -0.53
SDC1-201ENST00000254351 TEX45Q8NA69 505 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 LRRC29Q8WV35 223 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 URB1-AS1Q96HZ7 61 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 TPPP3Q9BW30 176 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 CSTL1Q9H114 145 aa11.75□□□□□ -0.53
SDC1-201ENST00000254351 IGHV3-21A0A0B4J1V1 117 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 MMP23AO75900 390 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 LPAL2Q16609 132 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 LRRC10Q5BKY1 277 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 PEAR1Q5VY43 1037 aaPredicted RBP11.74□□□□□ -0.53
SDC1-201ENST00000254351 ACP7Q6ZNF0 438 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 TMEM167BQ9NRX6 74 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 FBLL1A6NHQ2 334 aaKnown RBP11.74□□□□□ -0.53
SDC1-201ENST00000254351 J3QR06 171 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 TM4SF20Q53R12 229 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 TTTY12Q9BZ98 90 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 OR51B2Q9Y5P1 312 aa11.74□□□□□ -0.53
SDC1-201ENST00000254351 PKDREJQ9NTG1 2253 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 IGHV1-24A0A0C4DH33 117 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 TBR1Q16650 682 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 WDR82Q6UXN9 313 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 TMEM251Q8N6I4 163 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 CNEP1R1Q8N9A8 125 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 SAP25Q8TEE9 199 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 PLCE1Q9P212 2302 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 SYS1-DBNDD2H3BUS1 97 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 PRR20EP86478 221 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 PRR20CP86479 221 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 PRR20DP86480 221 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 PRR20BP86481 221 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 PRR20AP86496 221 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 TMEM249Q2WGJ8 235 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 C11orf53Q8IXP5 236 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 DUSP23Q9BVJ7 150 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 IGKV1-16P04430 117 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 SP9P0CG40 484 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 IL11RAQ14626 422 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 ZNF766Q5HY98 468 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 DUX4L9Q6RFH8 374 aaPredicted RBP11.73□□□□□ -0.53
SDC1-201ENST00000254351 CLEC2AQ6UVW9 174 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 PNKDQ8N490 385 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 OR2Z1Q8NG97 314 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 LINC00470Q9BZP3 86 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 ADGRG4Q8IZF6 3080 aa11.73□□□□□ -0.53
SDC1-201ENST00000254351 IGKV3D-15A0A087WSY6 115 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 SP1P08047 785 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 ABHD17BQ5VST6 288 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 Q71RC1 249 aaPredicted RBP11.72□□□□□ -0.53
SDC1-201ENST00000254351 IGF2BP2-AS1Q96M15 143 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 GSX1Q9H4S2 264 aaPredicted RBP11.72□□□□□ -0.53
SDC1-201ENST00000254351 ABI3Q9P2A4 366 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 C7orf71A4D174 169 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 GAGE10A6NGK3 116 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 TMEM238C9JI98 176 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 PRDX2P32119 198 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 DMXL1Q9Y485 3027 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 TTC28Q96AY4 2481 aa11.72□□□□□ -0.53
SDC1-201ENST00000254351 A0A1W2PRE2 83 aa11.71□□□□□ -0.53
SDC1-201ENST00000254351 TMEM11P17152 192 aa11.71□□□□□ -0.53
SDC1-201ENST00000254351 ORM2P19652 201 aa11.71□□□□□ -0.53
SDC1-201ENST00000254351 REG1BP48304 166 aa11.71□□□□□ -0.53
SDC1-201ENST00000254351 MRPL49Q13405 166 aaKnown RBP11.71□□□□□ -0.53
SDC1-201ENST00000254351 CT55Q8WUE5 264 aa11.71□□□□□ -0.53
SDC1-201ENST00000254351 B4GALT7Q9UBV7 327 aa11.71□□□□□ -0.53
SDC1-201ENST00000254351 HSPE1P61604 102 aaKnown RBP11.71□□□□□ -0.53
SDC1-201ENST00000254351 NRN1LQ496H8 165 aa11.71□□□□□ -0.53
SDC1-201ENST00000254351 SPRNQ5BIV9 151 aa11.71□□□□□ -0.53
SDC1-201ENST00000254351 LINC00322Q6ZN03 302 aaPredicted RBP11.71□□□□□ -0.53
SDC1-201ENST00000254351 FAM231BA6NCW3 169 aa11.71□□□□□ -0.54
SDC1-201ENST00000254351 C15orf61A6NNL5 157 aa11.71□□□□□ -0.54
SDC1-201ENST00000254351 C15orf65H3BRN8 121 aa11.71□□□□□ -0.54
SDC1-201ENST00000254351 K7ERU9 68 aa11.71□□□□□ -0.54
SDC1-201ENST00000254351 ZNF207O43670 478 aaKnown RBP11.71□□□□□ -0.54
SDC1-201ENST00000254351 REG1AP05451 166 aa11.71□□□□□ -0.54
SDC1-201ENST00000254351 SAA2P0DJI9 122 aaPredicted RBP11.71□□□□□ -0.54
SDC1-201ENST00000254351 BHLHA15Q7RTS1 189 aaPredicted RBP11.71□□□□□ -0.54
SDC1-201ENST00000254351 MRPL27Q9P0M9 148 aaKnown RBP11.71□□□□□ -0.54
SDC1-201ENST00000254351 H3BUT2 72 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 PPBPP02775 128 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 C8orf88P0DMB2 117 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 AP1S3Q96PC3 154 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 SLC25A33Q9BSK2 321 aa11.7□□□□□ -0.54
SDC1-201ENST00000254351 LY96Q9Y6Y9 160 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms