RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ATG101Q9BSB4 218 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 REG4Q9BYZ8 158 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 CARHSP1Q9Y2V2 147 aaKnown RBP11.13□□□□□ -0.63
LDLR-201ENST00000252444 CNTRLQ7Z7A1 2325 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 APELAP0DMC3 54 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 CACNG7P62955 275 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 PAPPA-AS1Q5QFB9 102 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 TMEM86BQ8N661 226 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 PRSS57Q6UWY2 283 aa11.13□□□□□ -0.63
LDLR-201ENST00000252444 GPX1P07203 203 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 PDE6HQ13956 83 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 TMEM14BQ9NUH8 114 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.12□□□□□ -0.63
LDLR-201ENST00000252444 H3BUX3 64 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 SEM1Q6ZVN7 128 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 TMPRSS5Q9H3S3 457 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 NDUFB4O95168 129 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 IGKV1-5P01602 117 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 IQCJQ1A5X6 159 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 C1orf194Q5T5A4 169 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 GOLT1BQ9Y3E0 138 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 IMMP2LQ96T52 175 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 FREM3P0C091 2139 aa11.12□□□□□ -0.63
LDLR-201ENST00000252444 ELANEP08246 267 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 MED19A0JLT2 244 aaPredicted RBP11.11□□□□□ -0.63
LDLR-201ENST00000252444 CRISP2P16562 243 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 FAM159AQ6UWV7 190 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 Q96MF0 132 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 TRGV11A0A075B6L2 103 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 K7EM74 188 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 RPL35P42766 123 aaKnown RBP11.11□□□□□ -0.63
LDLR-201ENST00000252444 SPATA31B1PQ5VZV4 182 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 OR11H4Q8NGC9 324 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 KIF26BQ2KJY2 2108 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 WFDC3Q8IUB2 231 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 C10orf105Q8TEF2 133 aa11.11□□□□□ -0.63
LDLR-201ENST00000252444 ASIPP42127 132 aa11.1□□□□□ -0.63
LDLR-201ENST00000252444 TMEM116Q8NCL8 245 aa11.1□□□□□ -0.63
LDLR-201ENST00000252444 SDF2L1Q9HCN8 221 aa11.1□□□□□ -0.63
LDLR-201ENST00000252444 TFF3Q07654 80 aa11.1□□□□□ -0.63
LDLR-201ENST00000252444 C11orf53Q8IXP5 236 aa11.1□□□□□ -0.63
LDLR-201ENST00000252444 DOCK9Q9BZ29 2069 aa11.1□□□□□ -0.63
LDLR-201ENST00000252444 MPTX1A8MV57 137 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 FCER1GP30273 86 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 CR1LQ2VPA4 569 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 SELLP14151 372 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 CCL20P78556 96 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 TCF24Q7RTU0 167 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 TMEM191AQ9H0A3 160 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 PHLDA3Q9Y5J5 127 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 AMTP48728 403 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 DGAT2L7PQ6IED9 249 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 GTSCR1Q86UQ5 136 aa11.09□□□□□ -0.63
LDLR-201ENST00000252444 A0A087X0M5 115 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 A0A1B0GX30 115 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 SNRNP200O75643 2136 aaKnown RBP11.08□□□□□ -0.64
LDLR-201ENST00000252444 TREML4Q6UXN2 200 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 SIGLEC15Q6ZMC9 328 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 SGK494Q96LW2 274 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 GPHA2Q96T91 129 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 C1QTNF4Q9BXJ3 329 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 PARLQ9H300 379 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 Q9H3A6 140 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 NDUFA4L2Q9NRX3 87 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 MAP1BP46821 2468 aaKnown RBP11.08□□□□□ -0.64
LDLR-201ENST00000252444 A8MXK9 166 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 RNASE2P10153 161 aaKnown RBP11.08□□□□□ -0.64
LDLR-201ENST00000252444 RNF223E7ERA6 249 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 HAX1O00165 279 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 SLC31A2O15432 143 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 STAG3L2P0CL84 134 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 STAG3L3P0CL85 134 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 LINC00473A8K010 186 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 Q6ZN92 141 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 SFRP2Q96HF1 295 aa11.08□□□□□ -0.64
LDLR-201ENST00000252444 PEF1Q9UBV8 284 aaKnown RBP11.08□□□□□ -0.64
LDLR-201ENST00000252444 TRAV21A0A0B4J279 112 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 ZNF585BQ52M93 769 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 TMEM97Q5BJF2 176 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 KLRD1Q13241 179 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 LINC01559Q495D7 138 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 RNASEKQ6P5S7 137 aaKnown RBP11.07□□□□□ -0.64
LDLR-201ENST00000252444 COPS9Q8WXC6 57 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 GGTLC1Q9BX51 225 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 LDLRAD2Q5SZI1 272 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 PET117Q6UWS5 81 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 LYPD6Q86Y78 171 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 MYOZ3Q8TDC0 251 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 MAP1LC3CQ9BXW4 147 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 HIST1H1AQ02539 215 aaPredicted RBP11.07□□□□□ -0.64
LDLR-201ENST00000252444 ICAM4Q14773 271 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 NPBQ8NG41 125 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 SGMS2Q8NHU3 365 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 MAP1LC3AQ9H492 121 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 TUBA4BQ9H853 241 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 OSTCQ9NRP0 149 aa11.07□□□□□ -0.64
LDLR-201ENST00000252444 IGKV1-6A0A0C4DH72 117 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 PCP4L1A6NKN8 68 aa11.06□□□□□ -0.64
LDLR-201ENST00000252444 C9JCJ5 164 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms