RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 CHST5Q9GZS9 411 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SDF2L1Q9HCN8 221 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 HILPDAQ9Y5L2 63 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LRP6O75581 1613 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LINC01548A6NM66 108 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 BUB1B-PAK6H3BSN5 160 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 EMDP50402 254 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 FZD5Q13467 585 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TDRG1Q3Y452 100 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LINC01587Q99440 93 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 MRPL20Q9BYC9 149 aaKnown RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF703Q9H7S9 590 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TRAV1-1A0A0B4J248 108 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 PSMB11A5LHX3 300 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SFT2D2O95562 160 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 HSPE1P61604 102 aaKnown RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 CEACAM21Q3KPI0 293 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 CCSMST1Q4G0I0 132 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 FAM72AQ5TYM5 149 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 C10orf113Q5VZT2 155 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 FAM90A2PQ658T7 463 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 RASL11AQ6T310 242 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 GCSAMQ8N6F7 178 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 CLDND2Q8NHS1 167 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 PLPPR1Q8TBJ4 325 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 PATE1Q8WXA2 126 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 WBP1Q96G27 269 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM160Q9NX00 188 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SEMA5BQ9P283 1151 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LAMTOR2Q9Y2Q5 125 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 OR51B2Q9Y5P1 312 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 PXMP4Q9Y6I8 212 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 COL2A1P02458 1487 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 AHDC1Q5TGY3 1603 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LEPROTL1O95214 131 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 LSM6P62312 80 aaKnown RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 MEF2BQ02080 365 aaPredicted RBP2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SAMD5Q5TGI4 173 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 IL17RELQ6ZVW7 336 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 NOXO1Q8NFA2 376 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 OR5AN1Q8NGI8 311 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 C14orf144Q96I85 54 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 C1QTNF5Q9BXJ0 243 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 SS18L2Q9UHA2 77 aa2.39□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1B0GWA3 101 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1W2PRS3 328 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 TSPAN2O60636 221 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 GLIPR1P48060 266 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 CCL7P80098 99 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 ATG4DQ86TL0 474 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 RNF182Q8N6D2 247 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PLPPR2Q96GM1 343 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 WNT10AQ9GZT5 417 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 A6NNC1 897 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 C15orf62A8K5M9 175 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 CXCL13O43927 109 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PRR20EP86478 221 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PRR20CP86479 221 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PRR20DP86480 221 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PRR20BP86481 221 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PRR20AP86496 221 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF479Q96JC4 524 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 CCDC140Q96MF4 163 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 DHHO43323 396 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 HMGN2P05204 90 aaKnown RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 NTF4P34130 210 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 HIST1H4AP62805 103 aaKnown RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 SYPL1Q16563 259 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 COX20Q5RI15 118 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM255BQ8WV15 326 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 SDHCQ99643 169 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 MESP1Q9BRJ9 268 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 SLC50A1Q9BRV3 221 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 NHSL1Q5SYE7 1610 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 TMSB15BA0A087X1C1 80 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 GRIFINA4D1Z8 144 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 VWC2LB2RUY7 222 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 H3BUT2 72 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PTGER1P34995 402 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 FOXA1P55317 472 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 ISXQ2M1V0 245 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 DMRTC1Q5HYR2 192 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 WDR82Q6UXN9 313 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 MAVSQ7Z434 540 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 RNF138Q8WVD3 245 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 USMG5Q96IX5 58 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 RNF5Q99942 180 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 SMIM2Q9BVW6 85 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PRDM6Q9NQX0 595 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 NPDC1Q9NQX5 325 aaPredicted RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 A0A096LPE4 126 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 TRBV5-5A0A0J9YX44 114 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1W2PR48 441 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 H3BP45 60 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 HPRT1P00492 218 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 SNRPCP09234 159 aaKnown RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PLNP26678 52 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 RBM3P98179 157 aaKnown RBP2.38□□□□□ -2.03
SCN1A-219ENST00000641575 PSG5Q15238 335 aa2.38□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM215Q68D42 235 aa2.38□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms