RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 EWSR1Q01844 656 aaKnown RBP eCLIP6.3□□□□□ -1.4
CPNE3-209ENST00000620393 NHLH2Q02577 135 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 BAXQ07812 192 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 KLK9Q2XQG4 91 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 C19orf54Q5BKX5 351 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 SLC25A24Q6NUK1 477 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 ETV3LQ6ZN32 361 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 OR1L6Q8NGR2 347 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 FAM110DQ8TAY7 271 aaPredicted RBP6.3□□□□□ -1.4
CPNE3-209ENST00000620393 ZC4H2Q9NQZ6 224 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 LINC00527Q9UJ94 153 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 KLK9Q9UKQ9 250 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 PAIP2BQ9ULR5 123 aaKnown RBP6.3□□□□□ -1.4
CPNE3-209ENST00000620393 FN1P02751 2386 aaKnown RBP6.3□□□□□ -1.4
CPNE3-209ENST00000620393 MTORP42345 2549 aa6.3□□□□□ -1.4
CPNE3-209ENST00000620393 KRTAP4-8A0A0G2JLE6 195 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 CYB5BO43169 146 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 CST7O76096 145 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 SCAF4O95104 1147 aaKnown RBP6.29□□□□□ -1.4
CPNE3-209ENST00000620393 BRI3O95415 125 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 OR8U8P0C7N1 319 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 DEFA4P12838 97 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 S100A11P31949 105 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 GPX4P36969 197 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-209ENST00000620393 EIF2B2P49770 351 aaKnown RBP6.29□□□□□ -1.4
CPNE3-209ENST00000620393 NKX2-5P52952 324 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-209ENST00000620393 AP2S1P53680 142 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-209ENST00000620393 MFAP2P55001 183 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 ARL16Q0P5N6 197 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 ZNF345Q14585 488 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 ECSCRQ19T08 205 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 LAMTOR1Q6IAA8 161 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 Q6ZSV7 163 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 TMUB2Q71RG4 321 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 HAPLN4Q86UW8 402 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 STX12Q86Y82 276 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 STPG2Q8N412 459 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 KCNRGQ8N5I3 272 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 OR10P1Q8NGE3 313 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 RNASEH2CQ8TDP1 164 aaKnown RBP6.29□□□□□ -1.4
CPNE3-209ENST00000620393 BSCL2Q96G97 398 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-209ENST00000620393 NOL4LQ96MY1 436 aaPredicted RBP6.29□□□□□ -1.4
CPNE3-209ENST00000620393 FANCD2OSQ96PS1 177 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 GGACTQ9BVM4 153 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 GON7Q9BXV9 100 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 KRTAP9-9Q9BYP9 154 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 KRTAP9-4Q9BYQ2 154 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 C16orf95Q9H693 158 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 HSPB11Q9Y547 144 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 DMRT1Q9Y5R6 373 aa6.29□□□□□ -1.4
CPNE3-209ENST00000620393 PLXNB1O43157 2135 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 ZFHX3Q15911 3703 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 IGLV11-55A0A075B6I3 123 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 PRSS46E5RG02 174 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 CORTO00230 105 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 TAAR5O14804 337 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 SOX15O60248 233 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 NDUFA7O95182 113 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 HIST1H1BP16401 226 aaKnown RBP6.28□□□□□ -1.4
CPNE3-209ENST00000620393 CFHR3Q02985 330 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 MLANAQ16655 118 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 ATP6V1FQ16864 119 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 OR8G2PQ6IF36 304 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 C19orf35Q6ZS72 473 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 C9orf62Q8N4C0 152 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 TMEM217Q8N7C4 229 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 OR1S2Q8NGQ3 325 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 OR2T6Q8NHC8 308 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 CACNG8Q8WXS5 425 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 PINX1Q96BK5 328 aaKnown RBP6.28□□□□□ -1.4
CPNE3-209ENST00000620393 MDFIQ99750 246 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 SERTAD4Q9NUC0 356 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 THYN1Q9P016 225 aa6.28□□□□□ -1.4
CPNE3-209ENST00000620393 TRBV9A0A0B4J1U6 114 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 TMEM89A2RUT3 159 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 H3BUA1 57 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 I3L2K1 104 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 DFFBO76075 338 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 IGLV1-40P01703 118 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 IGHG4P01861 327 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 PRH1P02810 166 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 HBG1P69891 147 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 HBG2P69892 147 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 DLK1P80370 383 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 CD69Q07108 199 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 EXOSC2Q13868 293 aaKnown RBP6.27□□□□□ -1.41
CPNE3-209ENST00000620393 TMEM95Q3KNT9 176 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 ETFRF1Q6IPR1 90 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 CENPVQ7Z7K6 275 aaPredicted RBP6.27□□□□□ -1.41
CPNE3-209ENST00000620393 OR5C1Q8NGR4 320 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 TAF15Q92804 592 aaKnown RBP eCLIP6.27□□□□□ -1.41
CPNE3-209ENST00000620393 MISP3Q96FF7 219 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 SMIM3Q9BZL3 60 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 ARL6Q9H0F7 186 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 FNDC4Q9H6D8 234 aaPredicted RBP6.27□□□□□ -1.41
CPNE3-209ENST00000620393 WFDC1Q9HC57 220 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 CYTL1Q9NRR1 136 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 ZNF355PQ9NSJ1 428 aa6.27□□□□□ -1.41
CPNE3-209ENST00000620393 RPS10-NUDT3A0A1W2PQS6 291 aa6.26□□□□□ -1.41
CPNE3-209ENST00000620393 KANTRA0A1W2PQU2 76 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms