RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 UBTD1Q9HAC8 227 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 MBNL3Q9NUK0 354 aaKnown RBP11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 NAV3Q8IVL0 2385 aa11.93□□□□□ -0.5
SHROOM1-208ENST00000617339 IGHV1-46P01743 117 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 TYMSP04818 313 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 NTF3P20783 257 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 GLRXP35754 106 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 HES1Q14469 280 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 ELOVL5Q9NYP7 299 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 DPRXA6NFQ7 191 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 BRWD1-AS2P59051 145 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 VAMP3Q15836 100 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 LEMD1Q68G75 181 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 TEX43Q6ZNM6 134 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 K7ENP7 123 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 OR9G9P0C7N8 305 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 AMTP48728 403 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 UCNP55089 124 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 C1orf229Q6ZS94 237 aaPredicted RBP11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 SSMEM1Q8WWF3 244 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 SFRP2Q96HF1 295 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 MSRB2Q9Y3D2 182 aa11.92□□□□□ -0.5
SHROOM1-208ENST00000617339 PROP1O75360 226 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 SLC35E4Q6ICL7 350 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 ST6GALNAC3Q8NDV1 305 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 OR4C5Q8NGB2 326 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 S1PR3Q99500 378 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 NDUFB3O43676 98 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 NDUFB8O95169 186 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 PLAUP00749 431 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 IGLV1-44P01699 117 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 CDC34P49427 236 aaPredicted RBP11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 LINC00310P59036 64 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 LCN2P80188 198 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 CALYQ9NYX4 217 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 TIMM8BQ9Y5J9 83 aaPredicted RBP11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 SNURFLB1AK76 121 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 PRB4P10163 310 aaPredicted RBP11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 SLC25A6P12236 298 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 RANP62826 216 aaKnown RBP11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 RPL31P62899 125 aaKnown RBP11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 KLRB1Q12918 225 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 Q6ZS49 121 aa11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 CENPVQ7Z7K6 275 aaPredicted RBP11.91□□□□□ -0.5
SHROOM1-208ENST00000617339 RNF212BA8MTL3 300 aa11.9□□□□□ -0.5
SHROOM1-208ENST00000617339 SRRM5B3KS81 715 aa11.9□□□□□ -0.5
SHROOM1-208ENST00000617339 WNT2P09544 360 aa11.9□□□□□ -0.5
SHROOM1-208ENST00000617339 RBX1P62877 108 aa11.9□□□□□ -0.5
SHROOM1-208ENST00000617339 FAM19A2Q8N3H0 131 aa11.9□□□□□ -0.5
SHROOM1-208ENST00000617339 OR10P1Q8NGE3 313 aa11.9□□□□□ -0.5
SHROOM1-208ENST00000617339 HCFC1P51610 2035 aa11.9□□□□□ -0.5
SHROOM1-208ENST00000617339 TCL1AP56279 114 aa11.9□□□□□ -0.5
SHROOM1-208ENST00000617339 MORN2Q502X0 79 aa11.9□□□□□ -0.5
SHROOM1-208ENST00000617339 PTPRBP23467 1997 aa11.9□□□□□ -0.51
SHROOM1-208ENST00000617339 A0A1W2PPV4 95 aa11.9□□□□□ -0.51
SHROOM1-208ENST00000617339 A1L4Q6 167 aa11.9□□□□□ -0.51
SHROOM1-208ENST00000617339 HLA-DRB5Q30154 266 aa11.9□□□□□ -0.51
SHROOM1-208ENST00000617339 OR10G8Q8NGN5 311 aa11.9□□□□□ -0.51
SHROOM1-208ENST00000617339 HIPK2Q9H2X6 1198 aa11.9□□□□□ -0.51
SHROOM1-208ENST00000617339 ZNF586Q9NXT0 402 aa11.9□□□□□ -0.51
SHROOM1-208ENST00000617339 ONECUT1Q9UBC0 465 aa11.9□□□□□ -0.51
SHROOM1-208ENST00000617339 TBL2Q9Y4P3 447 aaKnown RBP11.9□□□□□ -0.51
SHROOM1-208ENST00000617339 SCO2A0A1W2PP80 73 aa11.89□□□□□ -0.51
SHROOM1-208ENST00000617339 MGST3O14880 152 aa11.89□□□□□ -0.51
SHROOM1-208ENST00000617339 YPEL1O60688 119 aa11.89□□□□□ -0.51
SHROOM1-208ENST00000617339 C1orf162Q8NEQ5 155 aaPredicted RBP11.89□□□□□ -0.51
SHROOM1-208ENST00000617339 YPEL2Q96QA6 119 aa11.89□□□□□ -0.51
SHROOM1-208ENST00000617339 PAFAH1B2P68402 229 aa11.89□□□□□ -0.51
SHROOM1-208ENST00000617339 PRR31Q5SQ13 230 aa11.89□□□□□ -0.51
SHROOM1-208ENST00000617339 LAMTOR2Q9Y2Q5 125 aa11.89□□□□□ -0.51
SHROOM1-208ENST00000617339 M0QZ24 198 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 CEACAM4O75871 244 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 Q8NA96 180 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 HTD2P86397 168 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 LRRC10Q5BKY1 277 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 SAPCD1Q5SSQ6 148 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 LYPD2Q6UXB3 125 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 OCC1Q8TAD7 63 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 DYSFO75923 2080 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 TRBV20OR9-2A0A075B6H5 130 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 VENTXO95231 258 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 CT45A1Q5HYN5 189 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 MBNL2Q5VZF2 373 aaKnown RBP11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 LCN12Q6JVE5 192 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 TMEM144Q7Z5S9 345 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 LHFPL4Q7Z7J7 247 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 CT45A3Q8NHU0 189 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 ALKBH7Q9BT30 221 aaPredicted RBP11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 TMEM147Q9BVK8 224 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 NPCDR1Q9BY65 106 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 HES4Q9HCC6 221 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 SLC25A10Q9UBX3 287 aaPredicted RBP11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 CRYBG3Q68DQ2 2970 aa11.88□□□□□ -0.51
SHROOM1-208ENST00000617339 PPIAL4EA0A075B759 164 aa11.87□□□□□ -0.51
SHROOM1-208ENST00000617339 PPIAL4DF5H284 164 aa11.87□□□□□ -0.51
SHROOM1-208ENST00000617339 PPIAL4FP0DN26 164 aa11.87□□□□□ -0.51
SHROOM1-208ENST00000617339 UHRF2Q96PU4 802 aa11.87□□□□□ -0.51
SHROOM1-208ENST00000617339 NAT8BQ9UHF3 227 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms