RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ST3GAL6Q9Y274 331 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 PYGO1Q9Y3Y4 419 aa3.01□□□□□ -1.93
LINC00540-201ENST00000611481 IGHV7-81A0A0B4J1V7 117 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 IGKV1D-13A0A0B4J2D9 117 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 KIR2DL5BA0A0G2JN68 375 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 KIR2DL5BA0A0G2JPC4 375 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 FAM240AA0A1B0GVK7 77 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 F5H768 121 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 K7N7A8 449 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 TNFRSF11BO00300 401 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 RER1O15258 196 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 FABP7O15540 132 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 CPSF4O95639 269 aaKnown RBP3□□□□□ -1.93
LINC00540-201ENST00000611481 ATP6V1G2O95670 118 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 IGKV1-13P0DP09 117 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 CELP19835 753 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 MYL9P24844 172 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 HLA-DMBP28068 263 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 AQP1P29972 269 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 GALR1P47211 349 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 HSPA13P48723 471 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 SERPINB9P50453 376 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 RND2P52198 227 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 AP2S1P53680 142 aaPredicted RBP3□□□□□ -1.93
LINC00540-201ENST00000611481 SYNJ2BPP57105 145 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 KRTAP10-1P60331 282 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 RAB14P61106 215 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 AQP6Q13520 282 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 APOFQ13790 326 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 ZFP69Q49AA0 526 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 C1orf100Q5SVJ3 147 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 C1orf146Q5VVC0 180 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 SLC16A13Q7RTY0 426 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 NAA40Q86UY6 237 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 C10orf67Q8IYJ2 551 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 KIR2DL5AQ8N109 375 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 KRTCAP2Q8N6L1 136 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 NATD1Q8N6N6 113 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 CD177Q8N6Q3 437 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 CHST4Q8NCG5 386 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 CSNK1G2-AS1Q8NCQ2 148 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 OR10W1Q8NGF6 305 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 OR2K2Q8NGT1 345 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 KIR2DL5BQ8NHK3 375 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 VN1R17PQ8TDU5 208 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 CREB3L1Q96BA8 519 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 SMIM19Q96E16 107 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 ZNF714Q96N38 554 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 RBP7Q96R05 134 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 PRSS27Q9BQR3 290 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 C11orf68Q9H3H3 251 aaKnown RBP3□□□□□ -1.93
LINC00540-201ENST00000611481 JPT2Q9H910 190 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 MARCOQ9UEW3 520 aaPredicted RBP3□□□□□ -1.93
LINC00540-201ENST00000611481 SLC7A11Q9UPY5 501 aa3□□□□□ -1.93
LINC00540-201ENST00000611481 NACAE9PAV3 2078 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 FAM159BA6NKW6 160 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 RFPL4AA6NLU0 287 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 ZNF850A8MQ14 1090 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 F5H5K5 113 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 RFPL4AL1F8VTS6 287 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 BUB1B-PAK6H3BSN5 160 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 KPNA4O00629 521 aaPredicted RBP2.99□□□□□ -1.93
LINC00540-201ENST00000611481 UBDO15205 165 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 SSNA1O43805 119 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 UPK1BO75841 260 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 MMP23AO75900 390 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 SNAPINO95295 136 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 RLN2P04090 185 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 EDDM3BP56851 147 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 CXCR4P61073 352 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 POLR2GP62487 172 aaKnown RBP eCLIP2.99□□□□□ -1.93
LINC00540-201ENST00000611481 RPL18Q07020 188 aaKnown RBP2.99□□□□□ -1.93
LINC00540-201ENST00000611481 ACSM3Q53FZ2 586 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 OR2B11Q5JQS5 317 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 SYT6Q5T7P8 510 aaPredicted RBP2.99□□□□□ -1.93
LINC00540-201ENST00000611481 OR2T5Q6IEZ7 315 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 DNM1P34Q6PK57 102 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 REG3GQ6UW15 175 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 KRTAP5-5Q701N2 237 aaPredicted RBP2.99□□□□□ -1.93
LINC00540-201ENST00000611481 TCF23Q7RTU1 214 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 Q8N9W7 124 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 OR2T29Q8NH02 315 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 VGLL1Q99990 258 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 C20orf144Q9BQM9 153 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 SCRT1Q9BWW7 348 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 ARL6Q9H0F7 186 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 TLNRD1Q9H1K6 362 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 CACYBPQ9HB71 228 aaKnown RBP2.99□□□□□ -1.93
LINC00540-201ENST00000611481 ABCB9Q9NP78 766 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 INIPQ9NRY2 104 aa2.99□□□□□ -1.93
LINC00540-201ENST00000611481 DEFB131BA0A096LNP1 70 aa2.98□□□□□ -1.93
LINC00540-201ENST00000611481 NBDYA0A0U1RRE5 68 aa2.98□□□□□ -1.93
LINC00540-201ENST00000611481 OOSP1A8MZH6 123 aa2.98□□□□□ -1.93
LINC00540-201ENST00000611481 LY6LH3BQJ8 138 aa2.98□□□□□ -1.93
LINC00540-201ENST00000611481 H7C423 109 aa2.98□□□□□ -1.93
LINC00540-201ENST00000611481 BIRC5O15392 142 aa2.98□□□□□ -1.93
LINC00540-201ENST00000611481 RAB3DO95716 219 aa2.98□□□□□ -1.93
LINC00540-201ENST00000611481 IGLV1-47P01700 117 aa2.98□□□□□ -1.93
LINC00540-201ENST00000611481 CDK1P06493 297 aa2.98□□□□□ -1.93
LINC00540-201ENST00000611481 CD37P11049 281 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms