RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 C4orf46Q504U0 113 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 LPCAT3Q6P1A2 487 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 ZNF818PQ6ZRF7 136 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 RBPMS2Q6ZRY4 209 aaKnown RBP8.62□□□□□ -1.03
HIF3A-217ENST00000600236 C19orf35Q6ZS72 473 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 C12orf45Q8N5I9 185 aaPredicted RBP8.62□□□□□ -1.03
HIF3A-217ENST00000600236 OR52B4Q8NGK2 314 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 OR51H1Q8NH63 302 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 MITD1Q8WV92 249 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 WDR89Q96FK6 387 aaPredicted RBP8.62□□□□□ -1.03
HIF3A-217ENST00000600236 QTRT1Q9BXR0 403 aaKnown RBP8.62□□□□□ -1.03
HIF3A-217ENST00000600236 TMEM140Q9NV12 185 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 SHPKQ9UHJ6 478 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 UFC1Q9Y3C8 167 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 S4R3C0 116 aa8.62□□□□□ -1.03
HIF3A-217ENST00000600236 TRAV25A0A0B4J276 109 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 A0A1B0GW64 132 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 TMEM213A2RRL7 107 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 C9orf170A2RU37 121 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 SNAPC5O75971 98 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 CLEC3BP05452 202 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 MYOD1P15172 320 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 GPR183P32249 361 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 DHRS11Q6UWP2 260 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 TMED4Q7Z7H5 227 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 CMTM1Q8IZ96 169 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 TMEM61Q8N0U2 210 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 UXS1Q8NBZ7 420 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 MARCH1Q8TCQ1 289 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 CACNG8Q8WXS5 425 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 FAM110AQ9BQ89 295 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 RETNQ9HD89 108 aa8.61□□□□□ -1.03
HIF3A-217ENST00000600236 MRPL27Q9P0M9 148 aaKnown RBP8.61□□□□□ -1.03
HIF3A-217ENST00000600236 IGLC7A0M8Q6 106 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 RBMY1BA6NDE4 496 aaKnown RBP8.6□□□□□ -1.03
HIF3A-217ENST00000600236 RBMY1EA6NEQ0 496 aaKnown RBP8.6□□□□□ -1.03
HIF3A-217ENST00000600236 MFSD2BA6NFX1 497 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 MARCH11A6NNE9 402 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 S1PR2O95136 353 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 CTSDP07339 412 aaPredicted RBP8.6□□□□□ -1.03
HIF3A-217ENST00000600236 RBMY1DP0C7P1 496 aaKnown RBP8.6□□□□□ -1.03
HIF3A-217ENST00000600236 EDN2P20800 178 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 S100GP29377 79 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 ELLP55199 621 aaPredicted RBP8.6□□□□□ -1.03
HIF3A-217ENST00000600236 UCP3P55916 312 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 TSPAN5P62079 268 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 IFITM2Q01629 132 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 PPP1R1AQ13522 171 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 TMEM128Q5BJH2 165 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 LAMTOR1Q6IAA8 161 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 BTNL8Q6UX41 500 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 SLC38A6Q8IZM9 456 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 C9orf62Q8N4C0 152 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 OR1L6Q8NGR2 347 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 ZNF502Q8TBZ5 544 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 VN1R17PQ8TDU5 208 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 TMEM230Q96A57 120 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 ZNF2Q9BSG1 426 aaPredicted RBP8.6□□□□□ -1.03
HIF3A-217ENST00000600236 WFDC10AQ9H1F0 79 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 C5orf66Q9H5L9 145 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 TENM3Q9P273 2699 aa8.6□□□□□ -1.03
HIF3A-217ENST00000600236 COL7A1Q02388 2944 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 LOC102724200A0A096LPH7 203 aaPredicted RBP8.59□□□□□ -1.03
HIF3A-217ENST00000600236 TRAV3A0A0B4J244 114 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 CGB1A6NKQ9 187 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 DBX1A6NMT0 343 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 SMLR1H3BR10 107 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 TGOLN2O43493 480 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 SCAF4O95104 1147 aaKnown RBP8.59□□□□□ -1.03
HIF3A-217ENST00000600236 SFT2D2O95562 160 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 F2RP25116 425 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 GNRHRP30968 328 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 H2BFSP57053 126 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 ZNF585BQ52M93 769 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 OR1L8Q8NGR8 309 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 OR2T35Q8NGX2 323 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 LSM10Q969L4 123 aaKnown RBP8.59□□□□□ -1.03
HIF3A-217ENST00000600236 MOB3AQ96BX8 217 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 RTBDNQ9BSG5 229 aaPredicted RBP8.59□□□□□ -1.03
HIF3A-217ENST00000600236 GGTLC1Q9BX51 225 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 FXYD6Q9H0Q3 95 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 MLXQ9UH92 298 aa8.59□□□□□ -1.03
HIF3A-217ENST00000600236 GPR31O00270 319 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 GOSR2O14653 212 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 C8orf88P0DMB2 117 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 OR13C7P0DN81 318 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 RPA2P15927 270 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 TM4SF20Q53R12 229 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 SLC25A24Q6NUK1 477 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 UNQ9165/PRO28630Q6UXU0 137 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 OR11H4Q8NGC9 324 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 BSCL2Q96G97 398 aaPredicted RBP8.58□□□□□ -1.04
HIF3A-217ENST00000600236 TMEM56Q96MV1 263 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 ATP6V0BQ99437 205 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 SPAG8Q99932 426 aaPredicted RBP8.58□□□□□ -1.04
HIF3A-217ENST00000600236 HINT2Q9BX68 163 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 GAR1Q9NY12 217 aaKnown RBP8.58□□□□□ -1.04
HIF3A-217ENST00000600236 FKBP11Q9NYL4 201 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 PRNDQ9UKY0 176 aa8.58□□□□□ -1.04
HIF3A-217ENST00000600236 PAIP2BQ9ULR5 123 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms