RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 HTR2BP41595 481 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 SPANXN5Q5MJ07 72 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 CTRB2Q6GPI1 263 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 OR5T1Q8NG75 326 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 OR4X2Q8NGF9 303 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 OR4C12Q96R67 309 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 P2RX4Q99571 388 aa11.68□□□□□ -0.54
TRIM28-207ENST00000597136 LYRM2Q9NU23 88 aaPredicted RBP11.68□□□□□ -0.54
TRIM28-207ENST00000597136 FXYD6-FXYD2A0A087WZ82 144 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 IGLV1-40P01703 118 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 RNASE2P10153 161 aaKnown RBP11.67□□□□□ -0.54
TRIM28-207ENST00000597136 PSMB8P28062 276 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 P2RY1P47900 373 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 CAV2P51636 162 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 RPP30P78346 268 aaKnown RBP11.67□□□□□ -0.54
TRIM28-207ENST00000597136 TMEM65Q6PI78 240 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 C19orf35Q6ZS72 473 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 ZNF546Q86UE3 836 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 ZNF114Q8NC26 417 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 SLC24A4Q8NFF2 622 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 TMEM170AQ8WVE7 144 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 DCUN1D4Q92564 292 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 GON7Q9BXV9 100 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 STRAPQ9Y3F4 350 aaKnown RBP11.67□□□□□ -0.54
TRIM28-207ENST00000597136 FAM24AA6NFZ4 105 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 C15orf62A8K5M9 175 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 NPY1RP25929 384 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 SUB1P53999 127 aaKnown RBP eCLIP11.67□□□□□ -0.542e-9■■■□□ 15.4
TRIM28-207ENST00000597136 ATP5IP56385 69 aaPredicted RBP11.67□□□□□ -0.54
TRIM28-207ENST00000597136 KIAA0141Q14154 515 aaPredicted RBP11.67□□□□□ -0.54
TRIM28-207ENST00000597136 C2orf83Q53S99 150 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 KHDC1LQ5JSQ8 128 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 OR1P1Q8NH06 330 aa11.67□□□□□ -0.54
TRIM28-207ENST00000597136 FAM110DQ8TAY7 271 aaPredicted RBP11.67□□□□□ -0.54
TRIM28-207ENST00000597136 F11RQ9Y624 299 aaKnown RBP11.67□□□□□ -0.54
TRIM28-207ENST00000597136 PF4V1P10720 104 aa11.66□□□□□ -0.54
TRIM28-207ENST00000597136 MFAP2P55001 183 aa11.66□□□□□ -0.54
TRIM28-207ENST00000597136 FOXE3Q13461 319 aa11.66□□□□□ -0.54
TRIM28-207ENST00000597136 ZFP69Q49AA0 526 aa11.66□□□□□ -0.54
TRIM28-207ENST00000597136 TMEM14EPQ6UXP3 125 aa11.66□□□□□ -0.54
TRIM28-207ENST00000597136 NDUFA11Q86Y39 141 aa11.66□□□□□ -0.54
TRIM28-207ENST00000597136 TMEM252Q8N6L7 170 aa11.66□□□□□ -0.54
TRIM28-207ENST00000597136 MS4A10Q96PG2 267 aa11.66□□□□□ -0.54
TRIM28-207ENST00000597136 DMRT1Q9Y5R6 373 aa11.66□□□□□ -0.54
TRIM28-207ENST00000597136 TSSC4Q9Y5U2 329 aaPredicted RBP11.66□□□□□ -0.54
TRIM28-207ENST00000597136 IGSF23A1L1A6 192 aa11.65□□□□□ -0.54
TRIM28-207ENST00000597136 HMSDA8MTL9 139 aa11.65□□□□□ -0.54
TRIM28-207ENST00000597136 ELANEP08246 267 aa11.65□□□□□ -0.54
TRIM28-207ENST00000597136 DEFA4P12838 97 aa11.65□□□□□ -0.54
TRIM28-207ENST00000597136 RAB9AP51151 201 aa11.65□□□□□ -0.54
TRIM28-207ENST00000597136 PVRIGQ6DKI7 326 aa11.65□□□□□ -0.54
TRIM28-207ENST00000597136 COMMD1Q8N668 190 aa11.65□□□□□ -0.54
TRIM28-207ENST00000597136 RNF152Q8N8N0 203 aa11.65□□□□□ -0.54
TRIM28-207ENST00000597136 PAIP2BQ9ULR5 123 aaKnown RBP11.65□□□□□ -0.54
TRIM28-207ENST00000597136 TNFSF18Q9UNG2 199 aa11.65□□□□□ -0.54
TRIM28-207ENST00000597136 M0QZ24 198 aa11.64□□□□□ -0.55
TRIM28-207ENST00000597136 PRH1P02810 166 aa11.64□□□□□ -0.55
TRIM28-207ENST00000597136 METTL15P1P0C7V9 234 aa11.64□□□□□ -0.55
TRIM28-207ENST00000597136 RPL12P30050 165 aaKnown RBP11.64□□□□□ -0.55
TRIM28-207ENST00000597136 RAB11AP62491 216 aa11.64□□□□□ -0.55
TRIM28-207ENST00000597136 NOXA1Q86UR1 476 aa11.64□□□□□ -0.55
TRIM28-207ENST00000597136 INO80EQ8NBZ0 244 aaPredicted RBP11.64□□□□□ -0.55
TRIM28-207ENST00000597136 HYLS1Q96M11 299 aa11.64□□□□□ -0.55
TRIM28-207ENST00000597136 FANCD2OSQ96PS1 177 aa11.64□□□□□ -0.55
TRIM28-207ENST00000597136 SLC25A31Q9H0C2 315 aa11.64□□□□□ -0.55
TRIM28-207ENST00000597136 RNF222A6NCQ9 220 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 PMS2P5A8MQ11 134 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 ARPC5O15511 151 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 CST7O76096 145 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 IFNA4P05014 189 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 OR8U8P0C7N1 319 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 DEFA5Q01523 94 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 EWSR1Q01844 656 aaKnown RBP eCLIP11.63□□□□□ -0.55
TRIM28-207ENST00000597136 KLK9Q2XQG4 91 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 SLC25A24Q6NUK1 477 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 ZNF491Q8N8L2 437 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 OR1L6Q8NGR2 347 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 MYOZ3Q8TDC0 251 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 AQP10Q96PS8 301 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 DUX3Q96PT4 197 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 KLK9Q9UKQ9 250 aa11.63□□□□□ -0.55
TRIM28-207ENST00000597136 IGLV11-55A0A075B6I3 123 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 NUP62P37198 522 aaPredicted RBP11.62□□□□□ -0.55
TRIM28-207ENST00000597136 SULT1A1P50225 295 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 NHLH2Q02577 135 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 ARL16Q0P5N6 197 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 PRR31Q5SQ13 230 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 OR8G2PQ6IF36 304 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 ETV3LQ6ZN32 361 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 C8orf86Q6ZUL3 223 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 ACOT7LQ6ZUV0 252 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 HAPLN4Q86UW8 402 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 STX12Q86Y82 276 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 KLHL30-AS1Q8NEE0 82 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 RNASEH2CQ8TDP1 164 aaKnown RBP11.62□□□□□ -0.55
TRIM28-207ENST00000597136 OR5B12Q96R08 314 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 ZNF355PQ9NSJ1 428 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 TRBV9A0A0B4J1U6 114 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 PRSS46E5RG02 174 aa11.62□□□□□ -0.55
TRIM28-207ENST00000597136 CYB5BO43169 146 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms