RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 C15orf65H3BRN8 121 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 MT-CO2P00403 227 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 PLAUP00749 431 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 KIR2DL2P43627 348 aaPredicted RBP12.57□□□□□ -0.4
UPF1-204ENST00000596842 NIT1Q86X76 327 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 ITLN1Q8WWA0 313 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 WFDC12Q8WWY7 111 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 SPRY4Q9C004 299 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 HES4Q9HCC6 221 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 IGHV2OR16-5A0A0B4J2B6 119 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 RPEL1Q2QD12 228 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 WDR31Q8NA23 367 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 ABCA4P78363 2273 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 SAA2-SAA4A0A096LPE2 208 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 HSBP1O75506 76 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 TNFSF13O75888 250 aa12.57□□□□□ -0.4
UPF1-204ENST00000596842 SAA2P0DJI9 122 aaPredicted RBP12.57□□□□□ -0.4
UPF1-204ENST00000596842 EIF4EBP1Q13541 118 aaPredicted RBP12.57□□□□□ -0.4
UPF1-204ENST00000596842 TNRC6BQ9UPQ9 1833 aaKnown RBP12.56□□□□□ -0.4
UPF1-204ENST00000596842 TYMSP04818 313 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 WNT2P09544 360 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 LCN12Q6JVE5 192 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 OR4S2Q8NH73 311 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 CCL13Q99616 98 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 CST9LQ9H4G1 147 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 J3QR06 171 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 M0R296 226 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 CRYABP02511 175 aaKnown RBP12.56□□□□□ -0.4
UPF1-204ENST00000596842 CD99P14209 185 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 PDLIM4P50479 330 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 OCIAD2Q56VL3 154 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 GCSAMQ8N6F7 178 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 RAB37Q96AX2 223 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 LINC00479Q96M42 142 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 IGHV1-18A0A0C4DH31 117 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 NUDT3O95989 172 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 USF1P22415 310 aaPredicted RBP12.56□□□□□ -0.4
UPF1-204ENST00000596842 FOXL1Q12952 345 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 ZCCHC24Q8N2G6 241 aaKnown RBP12.56□□□□□ -0.4
UPF1-204ENST00000596842 OR10W1Q8NGF6 305 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 OR51B2Q9Y5P1 312 aa12.56□□□□□ -0.4
UPF1-204ENST00000596842 MSMPQ1L6U9 139 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 VWC2Q2TAL6 325 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 TIGITQ495A1 244 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 TMEM144Q7Z5S9 345 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 NABP2Q9BQ15 211 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 IFI27L2Q9H2X8 130 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 ZFHX2Q9C0A1 2572 aaPredicted RBP12.55□□□□□ -0.4
UPF1-204ENST00000596842 MGST3O14880 152 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 VDAC2P45880 294 aaPredicted RBP12.55□□□□□ -0.4
UPF1-204ENST00000596842 DEFB123Q8N688 67 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 EAF1Q96JC9 268 aaPredicted RBP12.55□□□□□ -0.4
UPF1-204ENST00000596842 IL36BQ9NZH7 164 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 CACNA1BQ00975 2339 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 TMPRSS2O15393 492 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 MPDU1O75352 247 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 COMPP49747 757 aaPredicted RBP12.55□□□□□ -0.4
UPF1-204ENST00000596842 SELENOTP62341 195 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 CT45A1Q5HYN5 189 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 OR9G1Q8NH87 305 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 CT45A3Q8NHU0 189 aa12.55□□□□□ -0.4
UPF1-204ENST00000596842 IGKV1-16P04430 117 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 CD59P13987 128 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 STUMQ69YW2 141 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 GTSF1LQ9H1H1 148 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 PROCRQ9UNN8 238 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 DSCAMO60469 2012 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 TRAV5A0A0B4J249 113 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 GAGE10A6NGK3 116 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 DNLZQ5SXM8 178 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 FAM216BQ8N7L0 139 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 TACC2O95359 2948 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 IGKV3-15P01624 115 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 HSPE1P61604 102 aaKnown RBP12.54□□□□□ -0.4
UPF1-204ENST00000596842 CHRDL1Q9BU40 450 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 CLEC5AQ9NY25 188 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 WNK2Q9Y3S1 2297 aa12.54□□□□□ -0.4
UPF1-204ENST00000596842 OR4B1Q8NGF8 309 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 GNB4Q9HAV0 340 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 JPT1Q9UK76 154 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 ZGRF1Q86YA3 2104 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 MMP23AO75900 390 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 SRIP30626 198 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 DEFB109BQ30KR1 87 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 TP53TG3Q9ULZ0 132 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 TBL2Q9Y4P3 447 aaKnown RBP12.53□□□□□ -0.4
UPF1-204ENST00000596842 IGHV3-21A0A0B4J1V1 117 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 CAMPP49913 170 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 PRB3Q04118 309 aaPredicted RBP12.53□□□□□ -0.4
UPF1-204ENST00000596842 PEAR1Q5VY43 1037 aaPredicted RBP12.53□□□□□ -0.4
UPF1-204ENST00000596842 RNASEKQ6P5S7 137 aaKnown RBP12.53□□□□□ -0.4
UPF1-204ENST00000596842 ZNF841Q6ZN19 808 aa12.53□□□□□ -0.4
UPF1-204ENST00000596842 CCL8P80075 99 aa12.52□□□□□ -0.4
UPF1-204ENST00000596842 BHLHA15Q7RTS1 189 aaPredicted RBP12.52□□□□□ -0.4
UPF1-204ENST00000596842 RPRMLQ8N4K4 120 aa12.52□□□□□ -0.4
UPF1-204ENST00000596842 RAB1CQ92928 201 aa12.52□□□□□ -0.4
UPF1-204ENST00000596842 SMIM12Q96EX1 92 aa12.52□□□□□ -0.4
UPF1-204ENST00000596842 ZNF835Q9Y2P0 537 aa12.52□□□□□ -0.4
UPF1-204ENST00000596842 TRGV10A0A0A0MS01 117 aa12.52□□□□□ -0.41
UPF1-204ENST00000596842 C15orf61A6NNL5 157 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms