RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MARCH11A6NNE9 402 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 H3BMQ9 156 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 GABARAPH6UMI1 98 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 RTL8CO15255 209 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 SNAPC5O75971 98 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 G6PCP35575 357 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 PPP5CP53041 499 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 UCP3P55916 312 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 TAS2R19P59542 299 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 OR2B8PP59922 312 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 POU2AF1Q16633 256 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 SCGB2B2Q4G0G5 96 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 LAMTOR1Q6IAA8 161 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 PLET1Q6UQ28 207 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 HINT2Q9BX68 163 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 HSPG2P98160 4391 aa8.07□□□□□ -1.12
VPS4B-202ENST00000588059 C11orf94C9JXX5 98 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 TGOLN2O43493 480 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 RAB3DO95716 219 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 CTSDP07339 412 aaPredicted RBP8.06□□□□□ -1.12
VPS4B-202ENST00000588059 PI3P19957 117 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 TBPP20226 339 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 MRPS10P82664 201 aaKnown RBP8.06□□□□□ -1.12
VPS4B-202ENST00000588059 STEAP1BQ6NZ63 245 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 ARRDC1Q8N5I2 433 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 TMEM229BQ8NBD8 167 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 OR4D10Q8NGI6 311 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 MCFD2Q8NI22 146 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 NSG2Q9Y328 171 aa8.06□□□□□ -1.12
VPS4B-202ENST00000588059 TEX50A0A1B0GTY4 177 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 SERPINE2P07093 398 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 TRAPPC2P0DI81 140 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 TRAPPC2BP0DI82 140 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 PTBP1P26599 531 aaKnown RBP eCLIP8.05□□□□□ -1.12
VPS4B-202ENST00000588059 ADMP35318 185 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 PIGPP57054 158 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 Q8NAQ8 132 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 OR10W1Q8NGF6 305 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 OR1L8Q8NGR8 309 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 QTRT1Q9BXR0 403 aaKnown RBP8.05□□□□□ -1.12
VPS4B-202ENST00000588059 HRH4Q9H3N8 390 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 OR51B2Q9Y5P1 312 aa8.05□□□□□ -1.12
VPS4B-202ENST00000588059 IGHV4-4A0A075B6R2 117 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 IGHV3OR16-8A0A075B7F1 116 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 IGLC7A0M8Q6 106 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 DISC1C4P0D8 188 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 ZNF207O43670 478 aaKnown RBP8.04□□□□□ -1.12
VPS4B-202ENST00000588059 CD74P04233 296 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 OR13C7P0DN81 318 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 SSBP1Q04837 148 aaKnown RBP8.04□□□□□ -1.12
VPS4B-202ENST00000588059 FAAP20Q6NZ36 180 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 H2BFWTQ7Z2G1 175 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 LHFPL1Q86WI0 220 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 TERB2Q8NHR7 220 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 ZFAND1Q8TCF1 268 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 SMIM4Q8WVI0 70 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 MRGPRFQ96AM1 343 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 ZNF486Q96H40 463 aaPredicted RBP8.04□□□□□ -1.12
VPS4B-202ENST00000588059 TSC22D3Q99576 134 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 SRSF8Q9BRL6 282 aaKnown RBP8.04□□□□□ -1.12
VPS4B-202ENST00000588059 C20orf24Q9BUV8 137 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 SLIRPQ9GZT3 109 aaKnown RBP8.04□□□□□ -1.12
VPS4B-202ENST00000588059 COPZ2Q9P299 210 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 RABL2AQ9UBK7 228 aaPredicted RBP8.04□□□□□ -1.12
VPS4B-202ENST00000588059 PRNDQ9UKY0 176 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 RABL2BQ9UNT1 228 aa8.04□□□□□ -1.12
VPS4B-202ENST00000588059 C3orf85A0A1B0GTC6 90 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 FABP12A6NFH5 140 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 OR2T8A6NH00 312 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 NDUFA4O00483 81 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 CTDSPLO15194 276 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 CYB5BO43169 146 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 CA1P00915 261 aaPredicted RBP8.03□□□□□ -1.12
VPS4B-202ENST00000588059 FGF2P09038 288 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 AKAIN1P0CW23 69 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 TNFSF8P32971 234 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 RND3P61587 244 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 MEF2DQ14814 521 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 TRIM16LQ309B1 348 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 THOC7Q6I9Y2 204 aaKnown RBP8.03□□□□□ -1.12
VPS4B-202ENST00000588059 SLC25A24Q6NUK1 477 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 HSD17B13Q7Z5P4 300 aaPredicted RBP8.03□□□□□ -1.12
VPS4B-202ENST00000588059 ZNF575Q86XF7 245 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 CCDC71LQ8N9Z2 235 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 OR13C8Q8NGS7 320 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 OR4A16Q8NH70 328 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 MARCH1Q8TCQ1 289 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 VN1R17PQ8TDU5 208 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 LSM10Q969L4 123 aaKnown RBP8.03□□□□□ -1.12
VPS4B-202ENST00000588059 BSCL2Q96G97 398 aaPredicted RBP8.03□□□□□ -1.12
VPS4B-202ENST00000588059 RNF2Q99496 336 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 CHRDL1Q9BU40 450 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 FAM212BQ9NTI7 297 aaPredicted RBP8.03□□□□□ -1.12
VPS4B-202ENST00000588059 FKBP11Q9NYL4 201 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 PLA2G2EQ9NZK7 142 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 THYN1Q9P016 225 aa8.03□□□□□ -1.12
VPS4B-202ENST00000588059 RSL24D1Q9UHA3 163 aaKnown RBP8.03□□□□□ -1.12
VPS4B-202ENST00000588059 C15orf61A6NNL5 157 aa8.02□□□□□ -1.13
VPS4B-202ENST00000588059 K7EMT4 169 aa8.02□□□□□ -1.13
VPS4B-202ENST00000588059 IGKV1-39P01597 117 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms